View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9077_low_13 (Length: 567)
Name: NF9077_low_13
Description: NF9077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9077_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 22 - 470
Target Start/End: Original strand, 50553454 - 50553908
Alignment:
| Q |
22 |
atcgtgttaatatcaaatatannnnnnnggtacgaaatgaagaggatatatttcataaatttgagacaacttctcaattggtccccaatatggaggaggt |
121 |
Q |
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| T |
50553454 |
atcgtattaatatcaaatatatttttttggtacgaaatgaagaggatatatttcataaatttgagacaacttctcaattggtccccaatatggaggaggt |
50553553 |
T |
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| Q |
122 |
ttaccaaaaactcgctattggtagtgtattttactacaaatttgagcaatat--agacatattgtgagactgtctaaac----ttttttcttttcaaact |
215 |
Q |
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| T |
50553554 |
ttaccaaaaactcgctattggtagtgtattttactacaaatttgagcaatatagagacatattgtgagactgtctaaactttttttttttttttcaaact |
50553653 |
T |
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| Q |
216 |
gtctaaacttgatccaactgaacttgaaaaatcctaccatcctttgaaatatactacatggttgcacaaacaaagaaaaactatatggttggtnnnnnnn |
315 |
Q |
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| T |
50553654 |
gtctaaacttgatccaactgaacttgaaaaatcctaccatcctttgaaatatactacatggttgcacaaacaaagaaaaactatatggttggtaaaaaaa |
50553753 |
T |
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| Q |
316 |
catttgaacacatcatttaattatttttaaaaatacacgttatttaatcatttggtctttctattttttcttaagcatgtcaacatgcaagacttcgt-c |
414 |
Q |
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| T |
50553754 |
catttgaacacatcatttaatta-ttttaaaaatacacgttatttaatcatttgctctttctattttttcttaagcatgtgaacatgcaagacttcgtcc |
50553852 |
T |
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| Q |
415 |
cattcccatcatttatttataaagtactcctaaatcctaatactaccgccactatc |
470 |
Q |
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| T |
50553853 |
cattcccatcatttatttataaagtactcctaaatcctaatactaccgccactatc |
50553908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 475 - 550
Target Start/End: Original strand, 50554010 - 50554085
Alignment:
| Q |
475 |
aaagattgatgtaacaacagctacagcccttaagaagaatttattttagaatacgatcaaaatgttagttccagct |
550 |
Q |
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| T |
50554010 |
aaagattgatgtaacaacagctacagccctcaagaagaatttattttagaatacgatcaaaatgttagttccagct |
50554085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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