View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9077_low_14 (Length: 563)
Name: NF9077_low_14
Description: NF9077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9077_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 434; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 98 - 547
Target Start/End: Original strand, 11562110 - 11562559
Alignment:
| Q |
98 |
aatttcaaattgaaatgaaacaaatatatagaagagacaaactatggtggttatttgaatgagagtcaagtaattagagatgatcaaatatagctaaaat |
197 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11562110 |
aatttcaaattgaaatgaaacaaatatatagaagagacaaactatggtggttatttgaatgagagtcaagtaattagagatgatcaaatatagctaaaat |
11562209 |
T |
|
| Q |
198 |
ttgaactgaataaaaatatgaactacatatagattcataaaataaaaagcaaactcaatcattttgtctaaccacgattgataaaactacttgcatattc |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
11562210 |
ttgaactgaataaaaatatgaactacatatagattcataaaataaaaagcaaactcaatcattttgtctaaccaccattgataaaactacttgcatattc |
11562309 |
T |
|
| Q |
298 |
ttccagaacaccataataaatagagtaaaagcagaacaaagtaccaacatccatatcctaaaagttcatgtttcatatggtcttgtttgtcaactgtgac |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11562310 |
ttccagaacaccataataaatagagtaaaagcagaacaaagtaccaacatccatatcctaaaagttcatgtttcatatggtcttgtttgtcaactgtgac |
11562409 |
T |
|
| Q |
398 |
cagacaaaccttgctatctttaattagttctactaagttgaaaagattaaggtggttcaaaagacaaaaagctaaaatctctgcgagaaattccttgttc |
497 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
11562410 |
cagacaaaccttgccatctttaattagttctactaagttgaaaagattagggtggttcaaaagacaaaaagctaaaaactctgcgagaaattccttgttc |
11562509 |
T |
|
| Q |
498 |
tgttgaaatccatttctgtcaagtggcttcacggtaacaacctgcgtctg |
547 |
Q |
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| T |
11562510 |
tgttgaaatccatttctgtcaagtggcttcacggtaacaacctgcgtctg |
11562559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 206 - 547
Target Start/End: Complemental strand, 11551020 - 11550680
Alignment:
| Q |
206 |
aataaaaatatgaactacatatagattcataaaataaaaagcaaactcaatcattttgtctaaccacgattgataaaactacttgcatattcttccagaa |
305 |
Q |
| |
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||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||| |||||| ||||||||||||| ||||||| ||||||||| |
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| T |
11551020 |
aataaaaatatgaactacatatatattcataaaattaaaagccaactcaatcattttgtcgaaccaccattgataaaactatttgcatactcttccagac |
11550921 |
T |
|
| Q |
306 |
caccataataaatagagtaaaagcagaacaaagtaccaacatccatatcctaaaagttcatgtttcatatggtcttgtttgtcaactgtgaccagacaaa |
405 |
Q |
| |
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|| || ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |||||| |||||| ||||||||||||||| |
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| T |
11550920 |
caacaaaataaatagagtaaaagcagaacaaagtaccaatattcatatcctaaaagttcatgtttcatatagtcttg-ttgtcagctgtgaccagacaaa |
11550822 |
T |
|
| Q |
406 |
ccttgctatctttaattagttctactaagttgaaaagattaaggtggttcaaaagacaaaaagctaaaatctctgcgagaaattccttgttctgttgaaa |
505 |
Q |
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| |||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |
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| T |
11550821 |
cattgccatctttaattaattctactaagttgaaaagattagggtggttcaaaagacaaaaagctaaaaactctgcgagaaattccttgttccgttgaaa |
11550722 |
T |
|
| Q |
506 |
tccatttctgtcaagtggcttcacggtaacaacctgcgtctg |
547 |
Q |
| |
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||||||||||||||||||||||| |||||||||||| |||| |
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| T |
11550721 |
tccatttctgtcaagtggcttcagcgtaacaacctgcatctg |
11550680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 356 - 547
Target Start/End: Complemental strand, 11546180 - 11545990
Alignment:
| Q |
356 |
taaaagttcatgtttcatatggtcttgtttgtcaactgtgaccagacaaaccttgctatctttaattagttctactaagttgaaaagattaaggtggttc |
455 |
Q |
| |
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||||||||||| |||||||||||||||| ||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||| | |
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| T |
11546180 |
taaaagttcataattcatatggtcttgtt-gtcaactgtgaccggacaaaccttgccatctttaattaattctactaagttgaaaagattaaggtggtgc |
11546082 |
T |
|
| Q |
456 |
aaaagacaaaaagctaaaatctctgcgagaaattccttgttctgttgaaatccatttctgtcaagtggcttcacggtaacaacctgcgtctg |
547 |
Q |
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||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
11546081 |
aaaagacaaaaagctaaaaactctgcgagaaattccttgttccgttgaaatccatttctgtcaagtggcttcaccgtaacaacctgcgtctg |
11545990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 11561904 - 11561983
Alignment:
| Q |
18 |
aagagctacataatttgaacttttaaatatgaaatctatgagacaaagaagagataaggcatgacaggttctgcacaagt |
97 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11561904 |
aagagctacataatttgaactttcaaatatgaaatctatgagacaaagaagagataaggcatgacaggttctgcacaagt |
11561983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 98 - 210
Target Start/End: Complemental strand, 11551371 - 11551258
Alignment:
| Q |
98 |
aatttcaaattgaaatgaaacaaatatatagaagagacaaactatggt-ggttatttgaatgagagtcaagtaattagagatgatcaaatatagctaaaa |
196 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||||||||| |||||| |||||||||||||||| || || ||||||||||||||||||| | |||||| |
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| T |
11551371 |
aatttcaaattgaaacgaaacaaacatatagaagagacaaattatggttggttatttgaatgagattctaggaattagagatgatcaaatacaactaaaa |
11551272 |
T |
|
| Q |
197 |
tttgaactgaataa |
210 |
Q |
| |
|
|||||||| |||| |
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| T |
11551271 |
gttgaactgcataa |
11551258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 216 - 285
Target Start/End: Complemental strand, 11546264 - 11546195
Alignment:
| Q |
216 |
tgaactacatatagattcataaaataaaaagcaaactcaatcattttgtctaaccacgattgataaaact |
285 |
Q |
| |
|
|||| |||||||||||||||||||| |||||| |||||||||||||||||||||||| || |||||||| |
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| T |
11546264 |
tgaaatacatatagattcataaaattaaaagccaactcaatcattttgtctaaccaccatcaataaaact |
11546195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 321 - 378
Target Start/End: Complemental strand, 27472189 - 27472132
Alignment:
| Q |
321 |
agtaaaagcagaacaaagtaccaacatccatatcctaaaagttcatgtttcatatggt |
378 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| | ||||||||||| |||| |
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|
| T |
27472189 |
agtaaaagcagaacaaagtaccaacatcaatatcctaacaaatcatgtttcatttggt |
27472132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 391
Target Start/End: Original strand, 19998879 - 19998940
Alignment:
| Q |
330 |
agaacaaagtaccaacatccatatcctaaaagttcatgtttcatatggtcttgtttgtcaac |
391 |
Q |
| |
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|||||||||||||| ||| |||||||||| ||||||||| ||| ||||||| ||| ||||| |
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|
| T |
19998879 |
agaacaaagtaccatcattaatatcctaaatgttcatgttacatttggtcttctttttcaac |
19998940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 312 - 368
Target Start/End: Original strand, 1188208 - 1188264
Alignment:
| Q |
312 |
aataaatagagtaaaagcagaacaaagtaccaacatccatatcctaaaagttcatgt |
368 |
Q |
| |
|
||||||| |||||||| ||||||||||||||| | ||||||||||||||||||| |
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|
| T |
1188208 |
aataaatcaagtaaaaggagaacaaagtaccaaatttgatatcctaaaagttcatgt |
1188264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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