View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9077_low_17 (Length: 561)
Name: NF9077_low_17
Description: NF9077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9077_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 15 - 534
Target Start/End: Original strand, 2223350 - 2223857
Alignment:
| Q |
15 |
tggtggtggtggggaaggaggagattgtagtggcgaattgtggtgactcaagggcggtgctttgtagtggcggtgtagcggtgccactttcacgagatca |
114 |
Q |
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| T |
2223350 |
tggtggtggtggggaaggaggagattgtagtggcgaattgtggtgactcaagggcggtgctttgtagtggcggtgtagcggtgccactttcacgagatca |
2223449 |
T |
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| Q |
115 |
taaggtgatggttaattaatggtgactcatgagatataaagaaacttacaattaagcaaactaaacatgtacacttaattctcataaagaaaatatgtac |
214 |
Q |
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| T |
2223450 |
taaggtgatggttaattaatggtgactcatgagatataaagaaacttacaattaagc-aactaaacatgtacacttaattctcataaagaaaatatgtac |
2223548 |
T |
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| Q |
215 |
accgaattggttaattagtttagttagtcatatatcatacatgtatatatgcatattgcttatctaacaagtaattaactagaataatagtttgnnnnnn |
314 |
Q |
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| T |
2223549 |
accgaattggttaattagtttagttagtcatatatcatacatgtatatatgcatattgcttatctaacaagtaattaaatagaataatggtttgtttttt |
2223648 |
T |
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| Q |
315 |
nnnnaattaagaagcaaaatacatttatggtatttgaactgcttttggtaccatatcaaacactttgttttggctgaattattattatttaatgatgatc |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||| |
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| T |
2223649 |
ttttaattaagaagcaaaatacatttatggtatttgaactgcttttggtaccatatccaacaatt-----------aattattattatttaatgatgatc |
2223737 |
T |
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| Q |
415 |
gatcagccagatcttccggatgaaagagaaaggattgaagcagcaggtggaagagtgattgattggaatgggaatcgtgttttaggagtactcgcaactt |
514 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2223738 |
gatcagccagatcttccggatgaaagagaaaggattgaagcagcaggtggaagagtgattgattggaatgggaatcgtgttttaggagtactcgcaactt |
2223837 |
T |
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| Q |
515 |
ccagatcaataggtacgtac |
534 |
Q |
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|||||||||||||||||||| |
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| T |
2223838 |
ccagatcaataggtacgtac |
2223857 |
T |
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