View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9077_low_18 (Length: 561)
Name: NF9077_low_18
Description: NF9077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9077_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 113 - 546
Target Start/End: Complemental strand, 1756069 - 1755657
Alignment:
| Q |
113 |
tacgatggagtagtaaagaagcaacataaaatcagatttaacacgagacatttgaaatatcaacaatttatctctgcaaacggtggcttggcttgtatcc |
212 |
Q |
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| T |
1756069 |
tacgatggagtcgtaaagaagcaacataaaatcagatttaacacgagacatttgaaatatcaacaatttatctctgcaaacggtggcttg-----tatcc |
1755975 |
T |
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| Q |
213 |
aaatgaatatgttgaataagagtcattcttatttggcattgaaaggcgacaattagcattgcattggagatttttggtgaagnnnnnnnncttcttagag |
312 |
Q |
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| T |
1755974 |
aaatgaatatgttgaataagagtcattcttatttggcattgaaaggcgacaattagcattgcattggagatttttgatgaagaaaaaaaacttcttagag |
1755875 |
T |
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| Q |
313 |
catccct-atatgaaactctccattttgatttttatgtagttctacatgtacaaatcattttgtttcagattgaacttatagacccctttatttggg-aa |
410 |
Q |
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| T |
1755874 |
catccctaatatgaaactctccattttgatttttatgtagttctacatgtacaaatcattttgtttcagattgaacctaaagactcctttatttgggaaa |
1755775 |
T |
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| Q |
411 |
cttacgaattggagaaaaagaaaatcacgattgttgtctaatgactatgctcgaacacccaccactcccggtacacccacaccttccaaagcaaatactt |
510 |
Q |
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| T |
1755774 |
cttacgaattggagaaaaagaaaatcacgattgttgtctaatgactatgctcga------------------acacccacaccctccaaagcaaatactt |
1755693 |
T |
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| Q |
511 |
aactttacctcaagaacactctaggacaagagtata |
546 |
Q |
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| T |
1755692 |
aactttacctcaggaacactctaggacaagagtata |
1755657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 19 - 114
Target Start/End: Complemental strand, 1757066 - 1756971
Alignment:
| Q |
19 |
ttagtgttgtttggttgattgtgaaggtggttgaagggaacttggatgactcatttgtatgagaaattttaacaatattcatcaataatagtagta |
114 |
Q |
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| T |
1757066 |
ttagtgttgtttggttggttgtgaaggtggttgaagggaacttggatgactcatttgtatgagaaattttaacaatattcatcaataatagtagta |
1756971 |
T |
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