View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9077_low_2 (Length: 756)
Name: NF9077_low_2
Description: NF9077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9077_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 571; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 571; E-Value: 0
Query Start/End: Original strand, 18 - 741
Target Start/End: Complemental strand, 11170772 - 11170048
Alignment:
| Q |
18 |
aagaaatggcatgtgcatgctgcatttcattttgtgctttagtcgttcaaatcaataatattcaatttttcaatcatgatgatctaactatagagnnnnn |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11170772 |
aagaaatggcatgtgcatgctgcatttcattttgtgctttagtggttcaaatcaataatattcaatttttcaatcatgatgatctaactatagagaaaaa |
11170673 |
T |
|
| Q |
118 |
nnntgtacaaatcgctgtcatatcgtgagcaggtatgtattagaatttatacgtcattgaataattaaaatatggccacnnnnnnnnnnnnnnnccacgt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
11170672 |
aaatgtacaaatcgctgtcatatcgtgagcaggtatgtattagaatttatacgtcattgaataattaaaatatggccacttttttatttttt--ccacgt |
11170575 |
T |
|
| Q |
218 |
cttgaatgtaaagatgtaaattacaannnnnnnacatgtttgaagattgtgtcataattgactctgccttcaaagtaatcataaattggtatgattttga |
317 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11170574 |
cttgaatgtaaagatgtaaattacaatttttttacatgtttgaagattgtgtcataattgactctgccttcaaagtaatcataaattggtatgattttga |
11170475 |
T |
|
| Q |
318 |
accgggaagaagaa---aaaatattcacgtttctttactcacacgagggcagtagcccaagagaagagaaattaattttaaccaaacacatgaaa-gaaa |
413 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
11170474 |
accgggaagaagaagaaaaaatattcacgtttctttactcacacgagggcagtagcccaagagaagagaaattaattttaaccaaacacatgaaaagaaa |
11170375 |
T |
|
| Q |
414 |
cacttccttgatcggcaactaacagatgactaatttaaatcggataagacttaaaaattatgtcatactccgttatacccttaatattagctaaagcatc |
513 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
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| T |
11170374 |
cacttccttgatcggcaactaacaaatgactaatttaaatcggataagacttaaaaattatctcttactccgttatacccttaatattagctaaagcatc |
11170275 |
T |
|
| Q |
514 |
aatacccatgttatattcaatgcaaatgtttatgttttatggagtattcacaacacaaatgtccaaccttcacttctcattcccgtttgtaaaagttgtc |
613 |
Q |
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| T |
11170274 |
aatacccatgttatattcaatgcaaatgtttatgttttatggagtattcacaacacaaatgtccaaccttcacttctcattcccgtttgtaaaagttgtc |
11170175 |
T |
|
| Q |
614 |
gaatctattaaagaagacttcttccattcacattgcaccactgtactaaatcccatccgttttaatcactcgccaaaaatctggatattcttgggtcctt |
713 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
11170174 |
gaatctattaaagaagacttcttccattcacattgcaccattgta-ttaatcccatccgttttaatctctcgccaaaaatctggatattcttgggtcctt |
11170076 |
T |
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| Q |
714 |
gatccaactaatgggtattatgtctgtg |
741 |
Q |
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| T |
11170075 |
gatccaactgatgggtattatgtctgtg |
11170048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 378 - 464
Target Start/End: Complemental strand, 5699785 - 5699698
Alignment:
| Q |
378 |
aagagaaatta-attttaaccaaacacatgaaagaaacacttccttgatcggcaactaacagatgactaatttaaatcggataagact |
464 |
Q |
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||||||||||| || |||| ||||||||| |||||||| | | ||||||| ||| |||||| ||||||||||| | ||||| |||||| |
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| T |
5699785 |
aagagaaattacatcttaatcaaacacataaaagaaacccctgcttgatcagcagctaacaaatgactaatttgagtcggacaagact |
5699698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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