View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9077_low_24 (Length: 529)

Name: NF9077_low_24
Description: NF9077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9077_low_24
NF9077_low_24
[»] chr5 (5 HSPs)
chr5 (18-513)||(41249091-41249592)
chr5 (404-513)||(29069470-29069580)
chr5 (414-482)||(26708330-26708399)
chr5 (414-482)||(26978064-26978133)
chr5 (406-473)||(7032937-7033005)
[»] chr3 (5 HSPs)
chr3 (405-491)||(54378395-54378482)
chr3 (410-513)||(50093631-50093735)
chr3 (404-501)||(11559843-11559941)
chr3 (404-501)||(11569112-11569210)
chr3 (414-474)||(22604492-22604553)
[»] chr1 (5 HSPs)
chr1 (404-492)||(28007580-28007669)
chr1 (405-470)||(33372293-33372359)
chr1 (404-503)||(25878795-25878895)
chr1 (437-501)||(10917708-10917772)
chr1 (405-488)||(30936705-30936785)
[»] chr8 (4 HSPs)
chr8 (404-511)||(4975591-4975699)
chr8 (404-511)||(15075278-15075386)
chr8 (404-513)||(20990915-20991027)
chr8 (414-470)||(2751481-2751538)
[»] chr2 (4 HSPs)
chr2 (399-513)||(8907806-8907919)
chr2 (404-492)||(29454480-29454569)
chr2 (96-164)||(9499367-9499435)
chr2 (404-511)||(30870132-30870240)
[»] chr4 (1 HSPs)
chr4 (415-492)||(22433607-22433685)
[»] chr6 (2 HSPs)
chr6 (95-163)||(31999374-31999442)
chr6 (312-396)||(12062521-12062605)
[»] scaffold0092 (1 HSPs)
scaffold0092 (423-513)||(54086-54176)
[»] chr7 (2 HSPs)
chr7 (404-474)||(8543597-8543666)
chr7 (404-501)||(42594529-42594627)


Alignment Details
Target: chr5 (Bit Score: 386; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 18 - 513
Target Start/End: Original strand, 41249091 - 41249592
Alignment:
Q  18 atgtcaatagtaacacatcaaattcctaactacctatatcaaatttcggttgatgtattattatttaccatgaatgaagtaactagcaaagacgagaaga 117  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||    
T  41249091 atgtcaatagtaacacatcaaatttctagctacctatatcaaatttcggttgatgtattattatataccatgagtgaagtaactagcaaagaagagaaga 41249190  T
Q  118 atgatgaaggacgatcatcaacgggcttgaatccaatctcccatggtccccaacggtgaaaaactatgtcttgctctttttctctctctaaaatgagact 217  Q
    || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41249191 ataatgaaggacgatcatcaacgggcttcaatccaatctcccatggtccccaacggtgaaaaactatgtcttgctctttttctctctctaaaatgagact 41249290  T
Q  218 agggattaaaaactatatataaaaaatcggattacagctctattgataccagtataaaaagtgcaggttcgttagttgaaatcatgcatgcctg-----c 312  Q
    |||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||     |    
T  41249291 agggattaaaaactatatgtaaaaaatctgattacagctctattcataccagtataaaaagtgcaggttcgttaggtaaaatcatgcatgcctgcgaatc 41249390  T
Q  313 gaggtttcttcaagtgaagggaaaaggtaattggtcttcaaatagtcactaaaccgttttacttccttggatgaggtgttgctcaccccatgcacggatc 412  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |||||||||    
T  41249391 gaggtttcttcaaatgaagggaaaaggtaattggtcttcaaatagtcactaaaccattttacttcgttggatgaggtgttgctcaccccaggcacggatc 41249490  T
Q  413 taatgtgggggcaat-gggtcaagcgaccccacttgtctccgcatgtgtattgtatttttaacttaaaattttatatatatttaatttgatctctcttta 511  Q
    |||||||||| |||| |||||||| ||||||||||| |||| |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  41249491 taatgtggggacaatggggtcaagtgaccccacttgcctccacatgtgtattgtatttttaacccaaaattttatatatatttaatttgatctctcttta 41249590  T
Q  512 ta 513  Q
    ||    
T  41249591 ta 41249592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 404 - 513
Target Start/End: Complemental strand, 29069580 - 29069470
Alignment:
Q  404 gcacggatctaatgtgggggcaatggg-tcaagcgaccccacttgtctccgcatgtgtattgtatttttaacttaaaattttatatatatttaatttgat 502  Q
    |||| |||||| ||||||||||||||| ||||||||||||||||| |||| |||| ||||||||||||||||  ||||||  ||||||||||| |||||     
T  29069580 gcacagatctagtgtgggggcaatggggtcaagcgaccccacttgcctccacatgggtattgtatttttaacccaaaattagatatatatttagtttgac 29069481  T
Q  503 ctctctttata 513  Q
    |||||||||||    
T  29069480 ctctctttata 29069470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 414 - 482
Target Start/End: Original strand, 26708330 - 26708399
Alignment:
Q  414 aatgtgggggcaatggg-tcaagcgaccccacttgtctccgcatgtgtattgtatttttaacttaaaatt 482  Q
    |||||| |||||||||| ||||| ||||||||||| |||| | ||||||||||||||||||  |||||||    
T  26708330 aatgtgagggcaatggggtcaagtgaccccacttgcctcctcttgtgtattgtatttttaatctaaaatt 26708399  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 414 - 482
Target Start/End: Original strand, 26978064 - 26978133
Alignment:
Q  414 aatgtgggggcaatggg-tcaagcgaccccacttgtctccgcatgtgtattgtatttttaacttaaaatt 482  Q
    |||||| |||||||||| ||||| ||||||||||| |||| | ||||||||||||||||||  |||||||    
T  26978064 aatgtgagggcaatggggtcaagtgaccccacttgcctcctcttgtgtattgtatttttaatctaaaatt 26978133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 406 - 473
Target Start/End: Complemental strand, 7033005 - 7032937
Alignment:
Q  406 acggatctaatgtgggggcaatggg-tcaagcgaccccacttgtctccgcatgtgtattgtatttttaa 473  Q
    |||||| || ||||||||||||||| |||| |||||||||||| |||| | ||| ||||||||||||||    
T  7033005 acggatgtagtgtgggggcaatggggtcaaccgaccccacttgcctccacttgtttattgtatttttaa 7032937  T

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Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 405 - 491
Target Start/End: Complemental strand, 54378482 - 54378395
Alignment:
Q  405 cacggatctaatgtgggggcaatggg-tcaagcgaccccacttgtctccgcatgtgtattgtatttttaacttaaaattttatatata 491  Q
    |||||||||| ||||||| ||||||| ||||||||||||||||| |||| |||||||||||||||||||||  |||||| ||||||||    
T  54378482 cacggatctagtgtggggacaatggggtcaagcgaccccacttgcctccacatgtgtattgtatttttaacccaaaattatatatata 54378395  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 410 - 513
Target Start/End: Complemental strand, 50093735 - 50093631
Alignment:
Q  410 atctaatgtgggggcaatggg-tcaagcgaccccacttgtctccgcatgtgtattgtatttttaacttaaaattttatatatatttaatttgatctctct 508  Q
    ||||| ||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||   ||||||  |||||||| || ||||| | ||||    
T  50093735 atctagtgtgggggcaatggggtcaagcgaccccacttgcctccacatgtgtattgtatttttaatccaaaattagatatatatctagtttgaccactct 50093636  T
Q  509 ttata 513  Q
    |||||    
T  50093635 ttata 50093631  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 404 - 501
Target Start/End: Complemental strand, 11559941 - 11559843
Alignment:
Q  404 gcacggatctaatgtgggggcaat-gggtcaagcgaccccacttgtctccgcatgtgtattgtatttttaacttaaaattttatatatatttaatttga 501  Q
    ||||||||||| |||| ||||||| |||||||||||||||||||  |||| |||||||||||||||||||||  ||||||  |||||||| || |||||    
T  11559941 gcacggatctagtgtgtgggcaatcgggtcaagcgaccccacttacctccacatgtgtattgtatttttaacccaaaattagatatatatctagtttga 11559843  T

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Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 404 - 501
Target Start/End: Complemental strand, 11569210 - 11569112
Alignment:
Q  404 gcacggatctaatgtgggggcaat-gggtcaagcgaccccacttgtctccgcatgtgtattgtatttttaacttaaaattttatatatatttaatttga 501  Q
    ||||||||||| |||| ||||||| |||||||||||||||||||  |||| |||||||||||||||||||||  ||||||  |||||||| || |||||    
T  11569210 gcacggatctagtgtgtgggcaatcgggtcaagcgaccccacttacctccacatgtgtattgtatttttaacccaaaattagatatatatctagtttga 11569112  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 414 - 474
Target Start/End: Complemental strand, 22604553 - 22604492
Alignment:
Q  414 aatgtgggggcaatggg-tcaagcgaccccacttgtctccgcatgtgtattgtatttttaac 474  Q
    ||||||||||||||||| ||||||||||||||||| |||| | ||||||||| |||||||||    
T  22604553 aatgtgggggcaatggggtcaagcgaccccacttgcctccacttgtgtattgcatttttaac 22604492  T

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Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 404 - 492
Target Start/End: Complemental strand, 28007669 - 28007580
Alignment:
Q  404 gcacggatctaatgtgggggcaatgg-gtcaagcgaccccacttgtctccgcatgtgtattgtatttttaacttaaaattttatatatat 492  Q
    ||||||||||| |||||||||||||| ||||||| |||||||||| |||| |||||||| ||||||||||||| ||||||  ||||||||    
T  28007669 gcacggatctagtgtgggggcaatggagtcaagccaccccacttgcctccacatgtgtactgtatttttaactcaaaattagatatatat 28007580  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 405 - 470
Target Start/End: Original strand, 33372293 - 33372359
Alignment:
Q  405 cacggatctaatgtgggggcaatggg-tcaagcgaccccacttgtctccgcatgtgtattgtatttt 470  Q
    ||||||||||  |||||||||||||| ||||||||||||||||| |||| |||||||||||||||||    
T  33372293 cacggatctagggtgggggcaatggggtcaagcgaccccacttgcctccacatgtgtattgtatttt 33372359  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 404 - 503
Target Start/End: Complemental strand, 25878895 - 25878795
Alignment:
Q  404 gcacggatctaatgtgggggcaatggg-tcaagcgaccccacttgtctccgcatgtgtattgtatttttaacttaaaattttatatatatttaatttgat 502  Q
    ||||||||  |||||||| |||||||| ||||||||||||||||| |||| | ||| ||||| |||||||||  ||||||  |||||| | |||||||||    
T  25878895 gcacggatacaatgtgggagcaatggggtcaagcgaccccacttgcctccacttgtatattgcatttttaacccaaaattaaatatatgtctaatttgat 25878796  T
Q  503 c 503  Q
    |    
T  25878795 c 25878795  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 437 - 501
Target Start/End: Original strand, 10917708 - 10917772
Alignment:
Q  437 gaccccacttgtctccgcatgtgtattgtatttttaacttaaaattttatatatatttaatttga 501  Q
    ||||||||||| |||| |||||||||| |||||||||| |||||||  ||||| ||||| |||||    
T  10917708 gaccccacttgcctccacatgtgtattatatttttaacctaaaattagatatagatttagtttga 10917772  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 405 - 488
Target Start/End: Original strand, 30936705 - 30936785
Alignment:
Q  405 cacggatctaatgtgggggcaatgg-gtcaagcgaccccacttgtctccgcatgtgtattgtatttttaacttaaaattttatat 488  Q
    |||||||| |||||||||||||||| ||||| |||||||||||| |||| | ||    ||||||||||||| |||||||| ||||    
T  30936705 cacggatccaatgtgggggcaatggagtcaaccgaccccacttgcctccacttg----ttgtatttttaacctaaaatttgatat 30936785  T

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Target: chr8 (Bit Score: 49; Significance: 9e-19; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 404 - 511
Target Start/End: Complemental strand, 4975699 - 4975591
Alignment:
Q  404 gcacggatctaatgtgggggcaatggg-tcaagcgaccccacttgtctccgcatgtgtattgtatttttaacttaaaattttatatatatttaatttgat 502  Q
    ||||||||  ||| ||||||||||||| |||||||||||||||||| ||| | |||||||||||||||||||  ||||||  |||||| | ||||||||     
T  4975699 gcacggatacaatatgggggcaatggggtcaagcgaccccacttgtatccacttgtgtattgtatttttaacccaaaattaaatatatgtctaatttgac 4975600  T
Q  503 ctctcttta 511  Q
    |||||||||    
T  4975599 ctctcttta 4975591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 404 - 511
Target Start/End: Original strand, 15075278 - 15075386
Alignment:
Q  404 gcacggatctaatgtgggggcaatggg-tcaagcgaccccacttgtctccgcatgtgtattgtatttttaacttaaaattttatatatatttaatttgat 502  Q
    ||||||||  ||||||||||||||||| ||||||||||||||||| |||| | ||||||||| |||||||||  ||||||  |||||||| || ||||||    
T  15075278 gcacggatacaatgtgggggcaatggggtcaagcgaccccacttgcctccacttgtgtattgcatttttaacccaaaattagatatatatctagtttgat 15075377  T
Q  503 ctctcttta 511  Q
    | |||||||    
T  15075378 ccctcttta 15075386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 404 - 513
Target Start/End: Complemental strand, 20991027 - 20990915
Alignment:
Q  404 gcacggatctaatgtgggggcaatggg-tcaagcgaccccacttgtctccgcatgtgtattgtatttttaacttaaaatt--ttatatatatttaatttg 500  Q
    ||||||||||| ||||||||||| ||| ||||||||||||||||| |||| ||||||||||||| ||||||   ||||||   ||||||||| |||||||    
T  20991027 gcacggatctagtgtgggggcaacggggtcaagcgaccccacttgcctccacatgtgtattgtacttttaatgcaaaattagatatatatatctaatttg 20990928  T
Q  501 atctctctttata 513  Q
    | | |||||||||    
T  20990927 acccctctttata 20990915  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 414 - 470
Target Start/End: Original strand, 2751481 - 2751538
Alignment:
Q  414 aatgtgggggcaatggg-tcaagcgaccccacttgtctccgcatgtgtattgtatttt 470  Q
    ||||||||||||||||| ||||||||||||||||| |||| | |||||||||||||||    
T  2751481 aatgtgggggcaatggggtcaagcgaccccacttgcctccacctgtgtattgtatttt 2751538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 9e-19; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 399 - 513
Target Start/End: Original strand, 8907806 - 8907919
Alignment:
Q  399 cccatgcacggatctaatgtgggggcaatggg-tcaagcgaccccacttgtctccgcatgtgtattgtatttttaacttaaaattttatatatatttaat 497  Q
    |||| ||||||||||| ||||||  ||||||| ||||||||||||||||| |||| ||||||||||| |||||||||  ||||||  ||||||||||| |    
T  8907806 cccaggcacggatctagtgtggg--caatggggtcaagcgaccccacttgcctccacatgtgtattgaatttttaacccaaaattagatatatatttagt 8907903  T
Q  498 ttgatctctctttata 513  Q
    ||||  ||||||||||    
T  8907904 ttgacttctctttata 8907919  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 404 - 492
Target Start/End: Complemental strand, 29454569 - 29454480
Alignment:
Q  404 gcacggatctaatgtgggggcaatggg-tcaagcgaccccacttgtctccgcatgtgtattgtatttttaacttaaaattttatatatat 492  Q
    ||||| ||||| |||||| |||||||| ||||||||||||||||| || |  ||||||||||||||||||||  |||||| |||||||||    
T  29454569 gcacgaatctagtgtgggagcaatggggtcaagcgaccccacttgccttcaaatgtgtattgtatttttaacccaaaattatatatatat 29454480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 96 - 164
Target Start/End: Original strand, 9499367 - 9499435
Alignment:
Q  96 gtaactagcaaagacgagaagaatgatgaaggacgatcatcaacgggcttgaatccaatctcccatggt 164  Q
    |||||||||||||| |||||||||||||| ||| || |||||||  |||||||||||| |||| |||||    
T  9499367 gtaactagcaaagaagagaagaatgatgatggaggaacatcaacaagcttgaatccaagctccaatggt 9499435  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 404 - 511
Target Start/End: Original strand, 30870132 - 30870240
Alignment:
Q  404 gcacggatctaatgtgggggcaatggg-tcaagcgaccccacttgtctccgcatgtgtattgtatttttaacttaaaattttatatatatttaatttgat 502  Q
    ||||||||  ||||||||||||||||| ||||| ||||||||||| || | | ||||||||| |||||||||  ||||||  |||||| | || |||||     
T  30870132 gcacggatacaatgtgggggcaatggggtcaagtgaccccacttgccttcacttgtgtattgcatttttaacccaaaattaaatatatgtctagtttgac 30870231  T
Q  503 ctctcttta 511  Q
    | |||||||    
T  30870232 ccctcttta 30870240  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 415 - 492
Target Start/End: Original strand, 22433607 - 22433685
Alignment:
Q  415 atgtgggggcaatggg-tcaagcgaccccacttgtctccgcatgtgtattgtatttttaacttaaaattttatatatat 492  Q
    |||||||||||||||| ||||||||||||||||| |||| | ||| |||||||||||||||  |||||| |||||||||    
T  22433607 atgtgggggcaatggggtcaagcgaccccacttgcctccacctgtttattgtatttttaacccaaaattatatatatat 22433685  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 95 - 163
Target Start/End: Original strand, 31999374 - 31999442
Alignment:
Q  95 agtaactagcaaagacgagaagaatgatgaaggacgatcatcaacgggcttgaatccaatctcccatgg 163  Q
    ||||||||||||||| |||||||||| ||||||| || |||||||   ||||||||||| |||| ||||    
T  31999374 agtaactagcaaagaagagaagaatggtgaaggaggagcatcaacaatcttgaatccaagctccaatgg 31999442  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 312 - 396
Target Start/End: Original strand, 12062521 - 12062605
Alignment:
Q  312 cgaggtttcttcaagtgaagggaaaaggtaattggtcttcaaatagtcactaaaccgttttacttccttggatgaggtgttgctc 396  Q
    |||||||||||||| || | |||||| | | ||||||||| ||||||||||||| ||  ||| ||| ||||| || |||||||||    
T  12062521 cgaggtttcttcaattggaaggaaaatgcagttggtcttctaatagtcactaaatcgccttagttcgttggaagaagtgttgctc 12062605  T

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Target: scaffold0092 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 423 - 513
Target Start/End: Complemental strand, 54176 - 54086
Alignment:
Q  423 gcaatgggtcaagcgaccccacttgtctccgcatgtgtattgtatttttaacttaaaattttatatatatttaatttgatctctctttata 513  Q
    |||||||||||| ||||  || ||| || | ||| |||||||||||||||| ||||||||| |||||||| || ||| |||  ||||||||    
T  54176 gcaatgggtcaaacgacttcatttgccttcacatatgtattgtatttttaatttaaaatttgatatatatctagtttaatccttctttata 54086  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 404 - 474
Target Start/End: Original strand, 8543597 - 8543666
Alignment:
Q  404 gcacggatctaatgtgggggcaatgggtcaagcgaccccacttgtctccgcatgtgtattgtatttttaac 474  Q
    ||||| ||||| |||||||  ||||||||||||||||||||||| || |  || |||||||||||||||||    
T  8543597 gcacgaatctagtgtggggataatgggtcaagcgaccccacttgccttcatat-tgtattgtatttttaac 8543666  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 404 - 501
Target Start/End: Complemental strand, 42594627 - 42594529
Alignment:
Q  404 gcacggatctaatgtgggggcaatggg-tcaagcgaccccacttgtctccgcatgtgtattgtatttttaacttaaaattttatatatatttaatttga 501  Q
    |||| |||| ||||||| ||||||||| |||| |||||||||||| |||| | ||  ||||||||||||||| |||| ||| |||| ||| || |||||    
T  42594627 gcacagatccaatgtggtggcaatggggtcaaccgaccccacttgcctccacttgcttattgtatttttaacctaaattttgatatttatgtagtttga 42594529  T

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