View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9077_low_25 (Length: 527)
Name: NF9077_low_25
Description: NF9077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9077_low_25 |
 | |
|
| [»] scaffold0016 (2 HSPs) |
| | |
|
| [»] scaffold0642 (2 HSPs) |
| | |
|
| [»] scaffold0345 (2 HSPs) |
| | |
|
| [»] scaffold0105 (2 HSPs) |
| | |
|
| [»] scaffold1526 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0016 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 173 - 512
Target Start/End: Complemental strand, 50993 - 50650
Alignment:
| Q |
173 |
aaaaaagatctgaaatgcatccaccgcaaagagtcctaaaatgccatggatcgtgattgaagattcaaagtaatcaaggagcattgtttggtaatattag |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
50993 |
aaaaaagatctgaaatgcatccaccgcaaagattcctaaaatgccatggatcatgattgaagattcaaagtaatcaaggagcattatttggtaatattag |
50894 |
T |
|
| Q |
273 |
ttatgccgacatgtctttagtgaaaccattttggctatctaattgtt----gtccctttcttagttaaaattttccatttatggagttgtcatattttgt |
368 |
Q |
| |
|
||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50893 |
ttatgtcgacatctctttagtgaaaccattttggctatctaattgtttgttgtccctttcttagttaaaattttccatttatggagttgtcatattttgt |
50794 |
T |
|
| Q |
369 |
gtgaattatgtaagggctgggttaacaattttggatacaaatttgtatttgcaccttttgctggattggctttaattaagtatgttttgtttttaagctt |
468 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50793 |
gtgaattatgtaagggctgggttaactattttggatacaaatttgtatttgcaccttttgctggattggctttaattaagtatgttttgtttttaagctt |
50694 |
T |
|
| Q |
469 |
gaatcttggatttgatattactttagagtaaaccatgtgaatct |
512 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
50693 |
gaatcttggatttaatattactttagagtaaaccatgtgaatct |
50650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 19 - 103
Target Start/End: Complemental strand, 53807 - 53719
Alignment:
| Q |
19 |
ctaacccccaacttccaccaaacaaacaa----tcatgaccgaacacggcaaactcaaattctactccggccaccctcctccgccgtcg |
103 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
53807 |
ctaacccccaacttccaccaaacaaacaaacaatcatgaccgaacacggcaaactcaaatcctactccggccaccctcctccgccgtcg |
53719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 173 - 512
Target Start/End: Original strand, 44498575 - 44498918
Alignment:
| Q |
173 |
aaaaaagatctgaaatgcatccaccgcaaagagtcctaaaatgccatggatcgtgattgaagattcaaagtaatcaaggagcattgtttggtaatattag |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
44498575 |
aaaaaagatctgaaatgcatccaccgcaaagattcctaaaatgccatggatcatgattgaagattcaaagtaatcaaggagcattatttggtaatattag |
44498674 |
T |
|
| Q |
273 |
ttatgccgacatgtctttagtgaaaccattttggctatctaattgt----tgtccctttcttagttaaaattttccatttatggagttgtcatattttgt |
368 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44498675 |
ttatgtcgacatctctttagtgaaaccattttggctatctaattgtttgttgtccctttcttagttaaaattttccatttatggagttgtcatattttgt |
44498774 |
T |
|
| Q |
369 |
gtgaattatgtaagggctgggttaacaattttggatacaaatttgtatttgcaccttttgctggattggctttaattaagtatgttttgtttttaagctt |
468 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44498775 |
gtgaattatgtaagggctgggttaactattttggatacaaatttgtatttgcaccttttgctggattggctttaattaagtatgttttgtttttaagctt |
44498874 |
T |
|
| Q |
469 |
gaatcttggatttgatattactttagagtaaaccatgtgaatct |
512 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
44498875 |
gaatcttggatttaatattactttagagtaaaccatgtgaatct |
44498918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 19 - 174
Target Start/End: Original strand, 44495636 - 44495791
Alignment:
| Q |
19 |
ctaacccccaacttccaccaaacaaacaatcatgaccgaacacggcaaactcaaattctactccggccaccctcctccgccgtcgtcgcaatcctttcaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44495636 |
ctaacccccaacttccaccaaacaaacaatcatgaccgaacacggcaaactcaaatcctattccggccaccctcctccgccgtcgtcgcaatcctttcaa |
44495735 |
T |
|
| Q |
119 |
cctccttagtacgagtctttccatggcatttccaatttcccatctcttcaccctaa |
174 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
44495736 |
cctccttagtacgagtctttccatggcatttccaatttcccacctcttcaccctaa |
44495791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0642 (Bit Score: 270; Significance: 1e-150; HSPs: 2)
Name: scaffold0642
Description:
Target: scaffold0642; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 173 - 515
Target Start/End: Original strand, 6958 - 7291
Alignment:
| Q |
173 |
aaaaaagatctgaaatgcatccaccgcaaagagtcctaaaatgccatggatcgtgattgaagattcaaagtaatcaaggagcattgtttggtaatattag |
272 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
6958 |
aaaaaagatctgaaatgcatccaccgcaaagagtcctaaaatgccatggatcgtgattgaagattcaaagtaatcaaggagcattatttggtaatattag |
7057 |
T |
|
| Q |
273 |
ttatgccgacatgtctttagtgaaaccattttggctatctaa----ttgttgtccctttcttagttaaaattttccatttatggagttgtcatattttgt |
368 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7058 |
ttatgccgacatctctttagtgaaaccattttggctatctaattgtttgttgtccctttcttagttaaaattttccatttatggagttgtcatattttgt |
7157 |
T |
|
| Q |
369 |
gtgaattatgtaagggctgggttaacaattttggatacaaatttgtatttgcaccttttgctggattggctttaattaagtatgttttgtttttaagctt |
468 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
7158 |
gtgaattatgtaagggctgggttaactattttggatacaaatttgtatttgcaccttttgctgg-------------aagtatgttttgtttttaagctt |
7244 |
T |
|
| Q |
469 |
gaatcttggatttgatattactttagagtaaaccatgtgaatctgtg |
515 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
7245 |
gaatcttggatttgatattactttagtgtaaaccatgtgaatctgtg |
7291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0642; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 19 - 174
Target Start/End: Original strand, 4234 - 4389
Alignment:
| Q |
19 |
ctaacccccaacttccaccaaacaaacaatcatgaccgaacacggcaaactcaaattctactccggccaccctcctccgccgtcgtcgcaatcctttcaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
4234 |
ctaacccccaacttccaccaaacaaacaatcatgaccgaacacggcaaactcaaatcctactccggccaccctcctccgccgtcgttgcaatcctttcaa |
4333 |
T |
|
| Q |
119 |
cctccttagtacgagtctttccatggcatttccaatttcccatctcttcaccctaa |
174 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
4334 |
cctccttagtacgagtctttccatggcatttccaatttcccacctcttcaccctaa |
4389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0345 (Bit Score: 270; Significance: 1e-150; HSPs: 2)
Name: scaffold0345
Description:
Target: scaffold0345; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 173 - 515
Target Start/End: Original strand, 16871 - 17204
Alignment:
| Q |
173 |
aaaaaagatctgaaatgcatccaccgcaaagagtcctaaaatgccatggatcgtgattgaagattcaaagtaatcaaggagcattgtttggtaatattag |
272 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
16871 |
aaaaaagatctgaaatgcatccaccgcaaagagtcctaaaatgccatggatcgtgattgaagattcaaagtaatcaaggagcattatttggtaatattag |
16970 |
T |
|
| Q |
273 |
ttatgccgacatgtctttagtgaaaccattttggctatctaa----ttgttgtccctttcttagttaaaattttccatttatggagttgtcatattttgt |
368 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16971 |
ttatgccgacatctctttagtgaaaccattttggctatctaattgtttgttgtccctttcttagttaaaattttccatttatggagttgtcatattttgt |
17070 |
T |
|
| Q |
369 |
gtgaattatgtaagggctgggttaacaattttggatacaaatttgtatttgcaccttttgctggattggctttaattaagtatgttttgtttttaagctt |
468 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
17071 |
gtgaattatgtaagggctgggttaactattttggatacaaatttgtatttgcaccttttgctgg-------------aagtatgttttgtttttaagctt |
17157 |
T |
|
| Q |
469 |
gaatcttggatttgatattactttagagtaaaccatgtgaatctgtg |
515 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
17158 |
gaatcttggatttgatattactttagtgtaaaccatgtgaatctgtg |
17204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0345; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 19 - 174
Target Start/End: Original strand, 14146 - 14301
Alignment:
| Q |
19 |
ctaacccccaacttccaccaaacaaacaatcatgaccgaacacggcaaactcaaattctactccggccaccctcctccgccgtcgtcgcaatcctttcaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
14146 |
ctaacccccaacttccaccaaacaaacaatcatgaccgaacacggcaaactcaaatcctactccggccaccctcctccgccgtcgttgcaatcctttcaa |
14245 |
T |
|
| Q |
119 |
cctccttagtacgagtctttccatggcatttccaatttcccatctcttcaccctaa |
174 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
14246 |
cctccttagtacgagtctttccatggcatttccaatttcccacctcttcaccctaa |
14301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105 (Bit Score: 270; Significance: 1e-150; HSPs: 2)
Name: scaffold0105
Description:
Target: scaffold0105; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 173 - 515
Target Start/End: Complemental strand, 22111 - 21778
Alignment:
| Q |
173 |
aaaaaagatctgaaatgcatccaccgcaaagagtcctaaaatgccatggatcgtgattgaagattcaaagtaatcaaggagcattgtttggtaatattag |
272 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
22111 |
aaaaaagatctgaaatgcatccaccgcaaagagtcctaaaatgccatggatcgtgattgaagattcaaagtaatcaaggagcattatttggtaatattag |
22012 |
T |
|
| Q |
273 |
ttatgccgacatgtctttagtgaaaccattttggctatctaat----tgttgtccctttcttagttaaaattttccatttatggagttgtcatattttgt |
368 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22011 |
ttatgccgacatctctttagtgaaaccattttggctatctaattgtttgttgtccctttcttagttaaaattttccatttatggagttgtcatattttgt |
21912 |
T |
|
| Q |
369 |
gtgaattatgtaagggctgggttaacaattttggatacaaatttgtatttgcaccttttgctggattggctttaattaagtatgttttgtttttaagctt |
468 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
21911 |
gtgaattatgtaagggctgggttaactattttggatacaaatttgtatttgcaccttttgctgg-------------aagtatgttttgtttttaagctt |
21825 |
T |
|
| Q |
469 |
gaatcttggatttgatattactttagagtaaaccatgtgaatctgtg |
515 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
21824 |
gaatcttggatttgatattactttagtgtaaaccatgtgaatctgtg |
21778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 19 - 174
Target Start/End: Complemental strand, 24835 - 24680
Alignment:
| Q |
19 |
ctaacccccaacttccaccaaacaaacaatcatgaccgaacacggcaaactcaaattctactccggccaccctcctccgccgtcgtcgcaatcctttcaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
24835 |
ctaacccccaacttccaccaaacaaacaatcatgaccgaacacggcaaactcaaatcctactccggccaccctcctccgccgtcgttgcaatcctttcaa |
24736 |
T |
|
| Q |
119 |
cctccttagtacgagtctttccatggcatttccaatttcccatctcttcaccctaa |
174 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
24735 |
cctccttagtacgagtctttccatggcatttccaatttcccacctcttcaccctaa |
24680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 270; Significance: 1e-150; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 173 - 515
Target Start/End: Original strand, 3381177 - 3381510
Alignment:
| Q |
173 |
aaaaaagatctgaaatgcatccaccgcaaagagtcctaaaatgccatggatcgtgattgaagattcaaagtaatcaaggagcattgtttggtaatattag |
272 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3381177 |
aaaaaagatctgaaatgcatccacctc---gagtcctaaaatgccatggatcgtgattgaagattcaaagtaatcaaggagcattgtttggtaatattag |
3381273 |
T |
|
| Q |
273 |
ttatgccgacatgtctttagtgaaaccattttggctatctaattgttgtccctttcttagttaaaattttccatttatggagttgtcatattttgtgtga |
372 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
3381274 |
ttatgccgacatgtctttagtgaaaccattttggctatctaattgtt------tgttgagttaaaattttccatttatggagttgtcatattttgtatga |
3381367 |
T |
|
| Q |
373 |
attatgtaagggctgggttaacaattttggatacaaatttgtatttgcaccttttgctggattggctttaattaagtatgttttgtttttaagcttgaat |
472 |
Q |
| |
|
| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
3381368 |
aatatgtaagggctgggttaactattttagatacaaatttgtatttgcaccttttgctggattggctttaactaagtatgttttgtttttaagcttgaat |
3381467 |
T |
|
| Q |
473 |
cttggatttgatattactttagagtaaaccatgtgaatctgtg |
515 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3381468 |
cttggatttgatattactttagagtaaaccatgtgaatctgtg |
3381510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 19 - 174
Target Start/End: Original strand, 3378366 - 3378519
Alignment:
| Q |
19 |
ctaacccccaacttccaccaaacaaacaatcatgaccgaacacggcaaactcaaattctactccggccaccctcctccgccgtcgtcgcaatcctttcaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3378366 |
ctaacccccaacttccaccaaacaaacaatcatgaccgaacaatcctt--tcaaatcctactccggccaccctcctccgccgtcgtcgcaatcctttcaa |
3378463 |
T |
|
| Q |
119 |
cctccttagtacgagtctttccatggcatttccaatttcccatctcttcaccctaa |
174 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
3378464 |
cctccttagtacgagtctttccatggcatttccaatttcccacctcttcaccctaa |
3378519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 20 - 111
Target Start/End: Original strand, 30355844 - 30355936
Alignment:
| Q |
20 |
taacccccaacttccaccaa-acaaacaatcatgaccgaacacggcaaactcaaattctactccggccaccctcctccgccgtcgtcgcaatc |
111 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||||||||||| ||||| ||||| || ||||||||||||||||| ||| |||||||||| |
|
|
| T |
30355844 |
taacccccaactcccaccaacacaaacaatcatgaccgaacacgacaaacccaaatcctcctccggccaccctcctcagccaccgtcgcaatc |
30355936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1526 (Bit Score: 148; Significance: 7e-78; HSPs: 1)
Name: scaffold1526
Description:
Target: scaffold1526; HSP #1
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 19 - 174
Target Start/End: Complemental strand, 1167 - 1012
Alignment:
| Q |
19 |
ctaacccccaacttccaccaaacaaacaatcatgaccgaacacggcaaactcaaattctactccggccaccctcctccgccgtcgtcgcaatcctttcaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1167 |
ctaacccccaacttccaccaaacaaacaatcatgaccgaacacggcaaactcaaatcctactccggccaccctcctccgccgtcgtcgcaatcctttcaa |
1068 |
T |
|
| Q |
119 |
cctccttagtacgagtctttccatggcatttccaatttcccatctcttcaccctaa |
174 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
1067 |
cctccttagtacgagtctttccatggcatttccaatttcccacctcttcaccctaa |
1012 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 118; Significance: 6e-60; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 19 - 144
Target Start/End: Original strand, 15707490 - 15707615
Alignment:
| Q |
19 |
ctaacccccaacttccaccaaacaaacaatcatgaccgaacacggcaaactcaaattctactccggccaccctcctccgccgtcgtcgcaatcctttcaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15707490 |
ctaacccccaacttccaccaaacaaacaatcatgaccgaacacggcaaactcaaatcctactccggccaccctcctccgccgtcgtcgcaatcctttcaa |
15707589 |
T |
|
| Q |
119 |
cctccttagtacgagtctttccatgg |
144 |
Q |
| |
|
|||| ||||||||||||||||||||| |
|
|
| T |
15707590 |
cctctttagtacgagtctttccatgg |
15707615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 397 - 474
Target Start/End: Complemental strand, 9200166 - 9200091
Alignment:
| Q |
397 |
ttttggatacaaatttgtatttgcaccttttgctggattggctttaattaagtatgttttgtttttaagcttgaatct |
474 |
Q |
| |
|
|||||||| |||||||||||| ||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
9200166 |
ttttggatccaaatttgtatt-gcaacttttt-tggattggctttagttaagtatgttttgtttttaagcttgaatct |
9200091 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 397 - 474
Target Start/End: Complemental strand, 9201928 - 9201854
Alignment:
| Q |
397 |
ttttggatacaaatttgtatttgcaccttttgctggattggctttaattaagtatgttttgtttttaagcttgaatct |
474 |
Q |
| |
|
|||||||| |||||||||||| ||| |||| ||||||||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
9201928 |
ttttggatccaaatttgtatt-gcaattttt--tggattggctttagttaagtaggttttgtttttaagcttgaatct |
9201854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 187 - 269
Target Start/End: Original strand, 2303461 - 2303543
Alignment:
| Q |
187 |
atgcatccaccgcaaagagtcctaaaatgccatggatcgtgattgaagattcaaagtaatcaaggagcattgtttggtaatat |
269 |
Q |
| |
|
|||||||||| | ||||||||||||||||||| ||| ||||||||||||||||| || | ||||||| ||||| ||||| |
|
|
| T |
2303461 |
atgcatccactactaagagtcctaaaatgccatttatcaagattgaagattcaaagtgattatggagcatgatttggcaatat |
2303543 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 97; Significance: 2e-47; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 283 - 444
Target Start/End: Complemental strand, 30112048 - 30111884
Alignment:
| Q |
283 |
atgtctttagtgaaaccattttggctatctaat----tgttgtccctttcttagttaaaattttccatttatggagttgtcatattttgtgtgaattatg |
378 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||| ||||||| ||||| |||||||||||||||| | |||||||||||||||||||| ||| |
|
|
| T |
30112048 |
atgtctttagtgaaatcattttggctatctaatgttttgttcaccctttcgtagttgaaattttccatttatg-atttgtcatattttgtgtgaataatg |
30111950 |
T |
|
| Q |
379 |
taagggctgggttaacaattttggatacaaatttgtatttgcaccttttgctggattggctttaat |
444 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
30111949 |
taagggctgagttaactattttggatacaaatttgtatttgtaacttttgctggattggctttaat |
30111884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 454 - 510
Target Start/End: Complemental strand, 30110775 - 30110718
Alignment:
| Q |
454 |
tttgtttttaagcttgaatcttggatttgatatt-actttagagtaaaccatgtgaat |
510 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
30110775 |
tttgtttttaagcttatatcttggatttgatattcactttagagtaaaccatgtgaat |
30110718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 173 - 245
Target Start/End: Complemental strand, 30112131 - 30112059
Alignment:
| Q |
173 |
aaaaaagatctgaaatgcatccaccgcaaagagtcctaaaatgccatggatcgtgattgaagattcaaagtaa |
245 |
Q |
| |
|
||||||||||| |||||||||||| |||||||| |||||||| |||| ||| ||||||||||||||||||| |
|
|
| T |
30112131 |
aaaaaagatctaaaatgcatccactccaaagagttctaaaatgtcatgcatcaagattgaagattcaaagtaa |
30112059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 111
Target Start/End: Complemental strand, 17850589 - 17850502
Alignment:
| Q |
24 |
ccccaacttccaccaaacaaacaatcatgaccgaacacggcaaactcaaattctactccggccaccctcctccgccgtcgtcgcaatc |
111 |
Q |
| |
|
||||| ||| ||| |||||||| |||||| |||||||| ||||||||||| || |||||| ||||| ||| ||||| ||||||||| |
|
|
| T |
17850589 |
ccccagcttgcactaaacaaaccatcatgcccgaacacaacaaactcaaatcctcctccggacacccaccttcgccgatgtcgcaatc |
17850502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 64 - 160
Target Start/End: Complemental strand, 36933038 - 36932949
Alignment:
| Q |
64 |
caaactcaaattctactccggccaccctcctccgccgtcgtcgcaatcctttcaacctccttagtacgagtctttccatggcatttccaatttccca |
160 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |||||| || ||||||| |||||| |||||||||||||||| |||| ||||| |
|
|
| T |
36933038 |
caaactcaaattctactccggcc-------tccgccgtcgttccaatccctttcacctcctctgtacgactctttccatggcattttcaatctccca |
36932949 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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