View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9077_low_28 (Length: 515)
Name: NF9077_low_28
Description: NF9077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9077_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 424
Target Start/End: Original strand, 29797573 - 29797999
Alignment:
| Q |
1 |
acagacacagtgttgtaacacaccacaccaaactgagacataatcagaggaactttcccaactgataagaagcaaaacagagtacaacacggagnnnnnn |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
29797573 |
acagacacagtgttgtaacacaccacaccaaactgagacataatcagaggaactttcccaactgataagaagcaaaacagagtacaacacagagagaaaa |
29797672 |
T |
|
| Q |
101 |
nnn--cctacttaaaaacggtgacaacgttgatacgtatgtacgtctagcaaatggggaatggagagccacatgcgtcagcaaccttgatggcattggga |
198 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29797673 |
aaaaacctacttaaaaacggtgacaaggttgatacgtatgtacgtctagcaaatggggaatggagagccacatgcgtcagcaaccttgatggcattggga |
29797772 |
T |
|
| Q |
199 |
gagctaacaagtttcttaaggttaggatctttcaaatattggcaaaggaaggcttttgttccttcagtttactgcaacaaattgcagagggagggttgga |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
29797773 |
gagctaacaagtttcttaaggttaggatctttcaaatattggcaaaggaaggcttttgttccttcagtttactgcaacaaattgcagaaggagggttgga |
29797872 |
T |
|
| Q |
299 |
tgaagtgataacacttgcacatgcacttagttgtaatgcgttgcatg-ttattcccattgataactttgtctttgcaaggagtacaacaaccataatgca |
397 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29797873 |
tgaagtgataacacttgcacatgcacttagttgtaatgcgttgcatgtttattcccattgataactttgtctttgcaaggagtacaacaaccataatgca |
29797972 |
T |
|
| Q |
398 |
caatgttaaacatgaaatcttcatttt |
424 |
Q |
| |
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| T |
29797973 |
caatgttaaacatgaaatcttcatttt |
29797999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 5 - 424
Target Start/End: Complemental strand, 49601093 - 49600694
Alignment:
| Q |
5 |
acacagtgttgtaacacaccacaccaaactgagacataatcagaggaactttcccaactgataagaagcaaaacagagtacaacacggagnnnnnnnnnc |
104 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||| |||||||||||| || |
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| T |
49601093 |
acacagtgttgtaacacaccacaccaaactgagacataaccagaggaactttccctattgataagaagcaaaatagagtacaacacaga----------- |
49601005 |
T |
|
| Q |
105 |
ctacttaaaaacggtgacaacgttgatacgtatgtacgtctagcaaatggggaatggagagccacatgcgtcagcaaccttgatggcattgggagagcta |
204 |
Q |
| |
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||||| ||||||| |||||||| ||||| ||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||| || |
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| T |
49601004 |
------aaaaa--gtgacaaggttgatacttatgt--gtctagcaaatcgggaatggagagccacatgcatcagaaaccttgatggcattgggagagtta |
49600915 |
T |
|
| Q |
205 |
acaagtttcttaaggttaggatctttcaaatattggcaaagg-aaggcttttgttccttcagtttactgcaacaaattgcagagggagggttggatgaag |
303 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
49600914 |
acaaatttcttaaggttaggatctttcaaatattggcaaaggcaaggcttttgttccttcagtttactgcaacaaattgcagaaggagggttggatgaaa |
49600815 |
T |
|
| Q |
304 |
tgataacacttgcacatgcacttagttgtaatgcgttgcatgttattcccattgataactttgtctttgcaaggagtacaacaaccataatgcacaatgt |
403 |
Q |
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|||| || |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||| || ||||||||||||||| |
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| T |
49600814 |
tgatggcatttgcacatgcacttagttgtaatgcgttgcatgttatttccattgataactctgtctttgcaagcagtacagtaagcataatgcacaatgt |
49600715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 235 - 326
Target Start/End: Complemental strand, 4490064 - 4489973
Alignment:
| Q |
235 |
tattggcaaaggaaggcttttgttccttcagtttactgcaacaaattgcagagggagggttggatgaagtgataacacttgcacatgcactt |
326 |
Q |
| |
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|||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||| |
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| T |
4490064 |
tattggcaaaggaaggctttcgctccttcagtttactgcaacaaattgcagaaggagggttggatgaagttatagcacttgcacatgcactt |
4489973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 424
Target Start/End: Complemental strand, 4489269 - 4489226
Alignment:
| Q |
381 |
acaacaaccataatgcacaatgttaaacatgaaatcttcatttt |
424 |
Q |
| |
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|||| ||||||||| ||||||||||||||| ||||||||||||| |
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| T |
4489269 |
acaataaccataatccacaatgttaaacataaaatcttcatttt |
4489226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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