View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9077_low_29 (Length: 510)
Name: NF9077_low_29
Description: NF9077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9077_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-104; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 20 - 287
Target Start/End: Complemental strand, 38073777 - 38073511
Alignment:
| Q |
20 |
acacagatactcacgattcttaaccgaccttataaaattcctacagctgtcttaagaatcattccacccactttcaatgttttcnnnnnnnnnnnnnncc |
119 |
Q |
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| T |
38073777 |
acacagatactcacgattcttaaccgaccttataaaattcctacagctgtcttaagaatcattccacccactttcaatgttgtcaaaaattaaaaaaac- |
38073679 |
T |
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| Q |
120 |
gaccttggaagtactccctcccttatcaaaaacaagcagcaaaagagttgtgttggttggtctcttaaatttcaaaccctaccnnnnnnntgacactgta |
219 |
Q |
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| T |
38073678 |
gaccttggaagtactccctcccttatcaaaaacaagcagcaaaagagttgtgttggttggtctcttaaatttcaaaccctaccaaaaaaatgacactgta |
38073579 |
T |
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| Q |
220 |
caaataaatgttaagaatattcaagtaattcgcacctactaatgtaacattgaatagatttcttaata |
287 |
Q |
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| T |
38073578 |
caaataaatgttaagaatattcaagtaattcgcacctactaatgtaacattgaatagatttcttaata |
38073511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 294 - 495
Target Start/End: Complemental strand, 38073205 - 38073012
Alignment:
| Q |
294 |
attagtcaagcaaacattttgtaccattaattaaactaaaaaagtctattatagtgttcctttaacacaccacacacccctcctaataagtcctaagtca |
393 |
Q |
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| T |
38073205 |
attagtcaagcaaacattttgtaccactaactaaactaaaaa-gtctattatagtgttcctttaacaccacacacacccctcctaataagtcctaagtca |
38073107 |
T |
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| Q |
394 |
tgtaaaaacattgtatcatttccattaccaatcatttttccaattttttaaaaaccaacaaacaagcttggttaaacttaaaataaaatctcatactctt |
493 |
Q |
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| T |
38073106 |
tgtaaaaacaatgtatcatttccattaccaatcatttttccaattttttaaaaacca----acaagcttggttaaacttaaaataa---ctcatactctt |
38073014 |
T |
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