View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9077_low_30 (Length: 498)
Name: NF9077_low_30
Description: NF9077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9077_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 19 - 486
Target Start/End: Complemental strand, 48014409 - 48013945
Alignment:
| Q |
19 |
ttaaatatgtgagatgtttttattgagccactttggtaataaaaaagtttaggcgagttggcattcatagattgacatatatcaggatttgtcgtaacac |
118 |
Q |
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| T |
48014409 |
ttaaatatgtgagatgtttttattgagccactttgataataaaaaagtttaggcgagttggcattcatagattgacatatatcaggatttgtcttaacac |
48014310 |
T |
|
| Q |
119 |
tcaacaagtgacaacaaatgtatttacaaattgctcactatagaagtcattatcctgactattgtagttgaatgcacagtcttacgagacacaagtaaat |
218 |
Q |
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| T |
48014309 |
tcaacaagtgacaacaaatgtatttacaaatttctcactatagaagtcattatcctgattattgtagttgaatgcacagtcttacaagacacgagtaaat |
48014210 |
T |
|
| Q |
219 |
ttcttttcaatgaaatcaaccatcattgacacttctattgagccactaaaattctaaag-nnnnnnnnnttatgctctacatttttcttcaagatcacat |
317 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |
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| T |
48014209 |
ttcttatcaatgaaatcaaccatcattgacacttctattgagccactaaaattccaaagaaaaaaaaaattatgctctacatttttcttcaagatcacat |
48014110 |
T |
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| Q |
318 |
taaatcttaattattannnnnnnaactcaacgcgttataaaatcatctgtgtatgtttgcttagcgttgtgtttatcaattccgccgtaagaaaccatga |
417 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48014109 |
taaatcttaattattatttttttaactcaacgcgttataaaatcatctgtgtatgtttgcttagcgttgtgtttatcaattccgccgtaagaaaccatga |
48014010 |
T |
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| Q |
418 |
aaattgtgatgaactaacttatttgctattagataatttatccttatccacggtaaattcatctagtat |
486 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48014009 |
aaattgtgatgaacta----atttgctattagataatttatccttatccacggtaaattcatctagtat |
48013945 |
T |
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