View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9077_low_31 (Length: 480)

Name: NF9077_low_31
Description: NF9077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9077_low_31
NF9077_low_31
[»] chr5 (11 HSPs)
chr5 (1-463)||(8549025-8549487)
chr5 (34-121)||(8527857-8527943)
chr5 (45-124)||(9002278-9002356)
chr5 (34-121)||(9075311-9075397)
chr5 (161-206)||(8545354-8545399)
chr5 (169-206)||(8643342-8643379)
chr5 (47-124)||(8643503-8643579)
chr5 (169-204)||(8635918-8635953)
chr5 (53-120)||(8640449-8640515)
chr5 (172-227)||(9075532-9075586)
chr5 (167-227)||(8527664-8527724)
[»] chr7 (1 HSPs)
chr7 (47-124)||(35777367-35777444)
[»] chr4 (2 HSPs)
chr4 (34-121)||(9442024-9442110)
chr4 (254-322)||(6608540-6608608)
[»] chr8 (1 HSPs)
chr8 (161-227)||(44438669-44438735)
[»] chr1 (1 HSPs)
chr1 (34-66)||(26324549-26324581)


Alignment Details
Target: chr5 (Bit Score: 447; Significance: 0; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 1 - 463
Target Start/End: Original strand, 8549025 - 8549487
Alignment:
Q  1 ttccctggtacagttttaaccacattagcttaattagtctttgttatgtaatattggtgttattttgtataggcgtgcaaagtttaaaattgcataaaga 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8549025 ttccctggtacagttttaaccacattagcttaattagcctttgttatgtaatattggtgttattttgtataggcgtgcaaagtttaaaattgcataaaga 8549124  T
Q  101 aaacaaagatcttgaatgatgactaaacatagcttaattttcataaagttatgatttttgaaaacatacatatctctttttaggatgcaaatgatgtctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8549125 aaacaaagatcttgaatgatgactaaacatagcttaattttcataaagttatgatttttgaaaacatacatatctctttttaggatgcaaatgatgtctt 8549224  T
Q  201 ttttgttatcttttaatctagatgttcgttgtcatgatgtctggttttacaagattggcttgtgatttgtttgcttgttagaaaaagacagtgattattg 300  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  8549225 ttttgttatcttttaatctagatgttcgttgtcatgatgtttggttttacaagattggcttgtgatttgtttgcttgttagaaaaagacaatgattattg 8549324  T
Q  301 ctcatctttttcattttgtttcctatcttcctagattcagtcttaaactgttctttgaaaaaggtttatgaatcgcgaaatgtgaattataatgaaccat 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8549325 ctcatctttttcattttgtttcctatcttcctagattcagtcttaaactgttctttgaaaaaggtttatgaatcgcgaaatgtgaattataatgaaccat 8549424  T
Q  401 ctatttgagaagtttatagactatatttaaatttcaatttgttgacatgatattgaactcttt 463  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8549425 ctatttgagaagcttatagactatatttaaatttcaatttgttgacatgatattgaactcttt 8549487  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 34 - 121
Target Start/End: Complemental strand, 8527943 - 8527857
Alignment:
Q  34 ttagtctttgttatgtaatattggtgttattttgtataggcgtgcaaagtttaaaattgcataaagaaaacaaagatcttgaatgatg 121  Q
    |||| |||||||||||||||||||||||||||| |||||| ||||||| | | ||||||||| ||||| |  ||||||||||||||||    
T  8527943 ttagactttgttatgtaatattggtgttattttatataggtgtgcaaa-tattaaattgcatgaagaagatgaagatcttgaatgatg 8527857  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 45 - 124
Target Start/End: Complemental strand, 9002356 - 9002278
Alignment:
Q  45 tatgtaatattggtgttattttgtataggcgtgcaaagtttaaaattgcataaagaaaacaaagatcttgaatgatgact 124  Q
    ||||||||||||||||| ||||||||||| ||||||||||| ||||||| | |||||||  |||||||||||||| ||||    
T  9002356 tatgtaatattggtgttgttttgtataggtgtgcaaagttt-aaattgcgtgaagaaaatgaagatcttgaatgacgact 9002278  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 34 - 121
Target Start/End: Original strand, 9075311 - 9075397
Alignment:
Q  34 ttagtctttgttatgtaatattggtgttattttgtataggcgtgcaaagtttaaaattgcataaagaaaacaaagatcttgaatgatg 121  Q
    |||| ||||||| ||||||| || ||||||||| |||||| ||||||| |||||| |||||| |||| ||  ||||||||||||||||    
T  9075311 ttagactttgttgtgtaatactgttgttattttatataggtgtgcaaattttaaa-ttgcatgaagagaatgaagatcttgaatgatg 9075397  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 161 - 206
Target Start/End: Original strand, 8545354 - 8545399
Alignment:
Q  161 aaaacatacatatctctttttaggatgcaaatgatgtcttttttgt 206  Q
    |||| ||||| ||||| |||||||||||||||||||||||||||||    
T  8545354 aaaaaatacaaatctcattttaggatgcaaatgatgtcttttttgt 8545399  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 169 - 206
Target Start/End: Complemental strand, 8643379 - 8643342
Alignment:
Q  169 catatctctttttaggatgcaaatgatgtcttttttgt 206  Q
    |||||||| |||||||||||||||||||||||||||||    
T  8643379 catatctcattttaggatgcaaatgatgtcttttttgt 8643342  T

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Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 47 - 124
Target Start/End: Complemental strand, 8643579 - 8643503
Alignment:
Q  47 tgtaatattggtgttattttgtataggcgtgcaaagtttaaaattgcataaagaaaacaaagatcttgaatgatgact 124  Q
    |||||||||||||||||||| |||||| ||||||| ||| |||||  || || ||||  |||||||||||||||||||    
T  8643579 tgtaatattggtgttattttatataggtgtgcaaa-ttttaaattatatgaaaaaaatgaagatcttgaatgatgact 8643503  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 169 - 204
Target Start/End: Complemental strand, 8635953 - 8635918
Alignment:
Q  169 catatctctttttaggatgcaaatgatgtctttttt 204  Q
    |||||||| |||||||||||||||||||||||||||    
T  8635953 catatctcattttaggatgcaaatgatgtctttttt 8635918  T

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Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 120
Target Start/End: Complemental strand, 8640515 - 8640449
Alignment:
Q  53 attggtgttattttgtataggcgtgcaaagtttaaaattgcataaagaaaacaaagatcttgaatgat 120  Q
    |||||||||||||| |||||| ||||||| ||| ||||||| | |||||||  |||||||||||||||    
T  8640515 attggtgttattttatataggtgtgcaaaattt-aaattgcgtgaagaaaatgaagatcttgaatgat 8640449  T

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Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 227
Target Start/End: Original strand, 9075532 - 9075586
Alignment:
Q  172 atctctttttaggatgcaaatgatgtcttttttgttatcttttaatctagatgttc 227  Q
    ||||| ||||||||||||||||||| ||||||||||| | ||||||||||| ||||    
T  9075532 atctcgttttaggatgcaaatgatggcttttttgttaac-tttaatctagaggttc 9075586  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 167 - 227
Target Start/End: Complemental strand, 8527724 - 8527664
Alignment:
Q  167 tacatatctctttttaggatgcaaatgatgtcttttttgttatcttttaatctagatgttc 227  Q
    |||| ||||| ||||| |||||||||||||||||||||  ||   ||||||||||||||||    
T  8527724 tacaaatctcattttaagatgcaaatgatgtctttttttgtaaaatttaatctagatgttc 8527664  T

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Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 47 - 124
Target Start/End: Complemental strand, 35777444 - 35777367
Alignment:
Q  47 tgtaatattggtgttattttgtataggcgtgcaaagtttaaaattgcataaagaaaacaaagatcttgaatgatgact 124  Q
    |||||||||||||||||||||||||| |||||||||||| ||| ||||  ||| |||  |||||||||||||||||||    
T  35777444 tgtaatattggtgttattttgtatagtcgtgcaaagttttaaactgcagtaagtaaatgaagatcttgaatgatgact 35777367  T

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Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 34 - 121
Target Start/End: Complemental strand, 9442110 - 9442024
Alignment:
Q  34 ttagtctttgttatgtaatattggtgttattttgtataggcgtgcaaagtttaaaattgcataaagaaaacaaagatcttgaatgatg 121  Q
    |||| |||||||||||||||||||||||||||| |||||| ||||||| | | ||||| ||| |||||||  ||||||||||||||||    
T  9442110 ttagactttgttatgtaatattggtgttattttatataggtgtgcaaa-tattaaattacatgaagaaaatgaagatcttgaatgatg 9442024  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 254 - 322
Target Start/End: Complemental strand, 6608608 - 6608540
Alignment:
Q  254 attggcttgtgatttgtttgcttgttagaaaaagacagtgattattgctcatctttttcattttgtttc 322  Q
    |||| ||||||||||| || |||| |||||||||||||||||||||  | | |||||||||||||||||    
T  6608608 attgacttgtgatttggtttcttggtagaaaaagacagtgattattaattagctttttcattttgtttc 6608540  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 227
Target Start/End: Original strand, 44438669 - 44438735
Alignment:
Q  161 aaaacatacatatctctttttaggatgcaaatgatgtcttttttgttatcttttaatctagatgttc 227  Q
    |||| ||||| ||||| |||||||| |||||||||||||||||| | | ||||||||| | ||||||    
T  44438669 aaaaaatacacatctcattttaggaggcaaatgatgtcttttttctaaacttttaatcaaaatgttc 44438735  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 34 - 66
Target Start/End: Original strand, 26324549 - 26324581
Alignment:
Q  34 ttagtctttgttatgtaatattggtgttatttt 66  Q
    |||| ||||||||||||||||||||||||||||    
T  26324549 ttagactttgttatgtaatattggtgttatttt 26324581  T

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