View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9077_low_35 (Length: 458)
Name: NF9077_low_35
Description: NF9077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9077_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 15 - 440
Target Start/End: Original strand, 5810274 - 5810690
Alignment:
| Q |
15 |
tcttcaaatcaaacatggaagtagttttatgttgtccagtaagtctttcattttccaacaaattaaaagcacctaaagcaacacataaaatatnnnnnnn |
114 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |
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| T |
5810274 |
tcttcaaatcaaacatggaagtagttttatgttgtccagtaagtctttcattttccaaaaaattaaaagcacctagagcaacacataaaatataaaaaaa |
5810373 |
T |
|
| Q |
115 |
nnntgtgaaaagttgaaaacaaacaacaagttgtgattttctacagaaattatagacaaaataaacattattcagaacttcaatatattatttcaacatt |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
5810374 |
a--tgtgaaaagttgaaaacaaacaacaagttgtgattttctacagaaattatagacaaaataaacattattcagaacttcaatatattattgcaacatt |
5810471 |
T |
|
| Q |
215 |
ggctactaaaaaaggatgaaataatagaatcatagctttccattcattaaccataaagaaacatactgtatcagagcgcatgaacaggctattccatgct |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
5810472 |
ggctactaaaaaaggatgaaataatagaatcatagctttcaattcattaaccataaagaaacatactgtatcagggcgcatgaacaggctattccatgct |
5810571 |
T |
|
| Q |
315 |
ctggtatctccactagcttcggctactttcctctcttcttctcttcgttgtttgagagtttttgttccttggtccttggaaacattgttcctacaacatg |
414 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||| |
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| T |
5810572 |
ctggtatctccactagcttcggctactttcctttcttcttctcttcgttgtttgagagtttttgt-------tccttggaaacaattttcctacaacatg |
5810664 |
T |
|
| Q |
415 |
taaaccataaaatgacaacacatgac |
440 |
Q |
| |
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| T |
5810665 |
taaaccataaaatgacaacacatgac |
5810690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 106; Significance: 7e-53; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 140 - 439
Target Start/End: Complemental strand, 38604444 - 38604154
Alignment:
| Q |
140 |
acaagttgtgattttctac-agaaattat--agacaaaataaacattattcagaacttcaatatattatttcaacattggctactaaaaaaggatgaaat |
236 |
Q |
| |
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||||||||||| ||||||| ||||| ||| ||| |||| || ||||||||||| | ||||| | |||| ||| |||||||||| |||||||||||||| |
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| T |
38604444 |
acaagttgtgactttctactagaaaatatgaagataaaacaagcattattcagagcatcaatgaactattgcaaaattggctactcaaaaaggatgaaat |
38604345 |
T |
|
| Q |
237 |
aatagaatcatagctttccattcattaaccataaagaaacatactgtatcagagcgcatgaacaggctattccatgctctggtatctccactagcttcgg |
336 |
Q |
| |
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|||| ||||||||||||| ||| | | ||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||| | |
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| T |
38604344 |
aatataatcatagctttcaatt---tcatcataaggaaacatactgtatcctggcgcatgaacagactattccatgctctggtatctcctttagcttcag |
38604248 |
T |
|
| Q |
337 |
ctactttcctctcttcttctcttcgttgtttgagagtttttgttccttggtccttggaaacattgttcctacaacatgtaaaccataaaatgacaacaca |
436 |
Q |
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|| ||||||| ||||| ||||||||||||||| ||||||| | ||||||||| |||||||||||||||||||||||||||||||||| ||| |
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| T |
38604247 |
ctgctttcctttcttcctctcttcgttgtttgtgagttttagagccttggtcc---------ttgttcctacaacatgtaaaccataaaatgacaataca |
38604157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 140 - 439
Target Start/End: Original strand, 37740501 - 37740790
Alignment:
| Q |
140 |
acaagttgtgattttctacagaaattat--agacaaaataaacattattcagaacttcaatatattatttcaacattggctactaaaaaaggatgaaata |
237 |
Q |
| |
|
||||||||||| |||||| ||||| ||| ||| ||||||| ||||||||| ||| | ||| | |||| || |||||| ||| ||||||||||||||| |
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| T |
37740501 |
acaagttgtgactttctatagaaaatatgaagataaaataagcattattcaaaacatgaatgaactattgaaaaattggcaactcaaaaaggatgaaata |
37740600 |
T |
|
| Q |
238 |
atagaatcatagctttccattcattaaccataaagaaacatactgtatcagagcgcatgaacaggctattccatgctctggtatctccactagcttcggc |
337 |
Q |
| |
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||||||||||| |||| ||| | | | ||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||| || |
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| T |
37740601 |
atagaatcataaatttcaatt---tcatcgtaaggaaacatactgtatcagggcgcatgaacagactattccatgctctggtatctcctttagcttcagc |
37740697 |
T |
|
| Q |
338 |
tactttcctctcttcttctcttcgttgtttgagagtttttgttccttggtccttggaaacattgttcctacaacatgtaaaccataaaatgacaacacat |
437 |
Q |
| |
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| T |
37740698 |
tgctttcctttcttcttctcttcgttgtttgagagttttagagccttggttc---------ttgttcctacaacatgtaaaccataaaatgacaatacat |
37740788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 140 - 439
Target Start/End: Original strand, 37756712 - 37757001
Alignment:
| Q |
140 |
acaagttgtgattttctacagaaattat--agacaaaataaacattattcagaacttcaatatattatttcaacattggctactaaaaaaggatgaaata |
237 |
Q |
| |
|
||||||||||| |||||| ||||| ||| ||| ||||||| ||||||||| ||| | ||| | |||| || |||||| ||| ||||||||||||||| |
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| T |
37756712 |
acaagttgtgactttctatagaaaatatgaagataaaataagcattattcaaaacatgaatgaactattgaaaaattggcaactcaaaaaggatgaaata |
37756811 |
T |
|
| Q |
238 |
atagaatcatagctttccattcattaaccataaagaaacatactgtatcagagcgcatgaacaggctattccatgctctggtatctccactagcttcggc |
337 |
Q |
| |
|
||||||||||| |||| ||| | | | ||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||| || |
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| T |
37756812 |
atagaatcataaatttcaatt---tcatcgtaaggaaacatactgtatcagggcgcatgaacagactattccatgctctggtatctcctttagcttcagc |
37756908 |
T |
|
| Q |
338 |
tactttcctctcttcttctcttcgttgtttgagagtttttgttccttggtccttggaaacattgttcctacaacatgtaaaccataaaatgacaacacat |
437 |
Q |
| |
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| ||||||| ||||| |||||||||||||||||||||| | ||||||| | |||||||||||||||||||||||||||||||||| |||| |
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| T |
37756909 |
tgctttcctttcttccactcttcgttgtttgagagttttagagccttggttc---------ttgttcctacaacatgtaaaccataaaatgacaatacat |
37756999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 140 - 439
Target Start/End: Original strand, 37762460 - 37762749
Alignment:
| Q |
140 |
acaagttgtgattttctacagaaattat--agacaaaataaacattattcagaacttcaatatattatttcaacattggctactaaaaaaggatgaaata |
237 |
Q |
| |
|
||||||||||| |||||| ||||| ||| ||| ||||||| ||||||||| ||| | ||| | |||| || |||||| ||| ||||||||||||||| |
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| T |
37762460 |
acaagttgtgactttctatagaaaatatgaagataaaataagcattattcaaaacatgaatgaactattgaaaaattggcaactcaaaaaggatgaaata |
37762559 |
T |
|
| Q |
238 |
atagaatcatagctttccattcattaaccataaagaaacatactgtatcagagcgcatgaacaggctattccatgctctggtatctccactagcttcggc |
337 |
Q |
| |
|
||||||||||| |||| ||| | | | ||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||| || |
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|
| T |
37762560 |
atagaatcataaatttcaatt---tcatcgtaaggaaacatactgtatcagggcgcatgaacagactattccatgctctggtatctcctttagcttcagc |
37762656 |
T |
|
| Q |
338 |
tactttcctctcttcttctcttcgttgtttgagagtttttgttccttggtccttggaaacattgttcctacaacatgtaaaccataaaatgacaacacat |
437 |
Q |
| |
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| ||||||| ||||| |||||||||||||||||||||| | ||||||| | |||||||||||||||||||||||||||||||||| |||| |
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| T |
37762657 |
tgctttcctttcttccactcttcgttgtttgagagttttagagccttggttc---------ttgttcctacaacatgtaaaccataaaatgacaatacat |
37762747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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