View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9077_low_38 (Length: 458)
Name: NF9077_low_38
Description: NF9077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9077_low_38 |
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| [»] scaffold1450 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 237 - 443
Target Start/End: Original strand, 15964011 - 15964220
Alignment:
| Q |
237 |
tgaatcataaattcctaatcaac---aacaacaacaaaactaccatcactaatcacaacaaatcatgagcataaccaaccaaaattgaagaagaaaaact |
333 |
Q |
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| T |
15964011 |
tgaatcataaattcctaatcaacaacaacaacaacaaaattaccatcactaatcacaagaaatcatgagcataaccaaccaaaattgaagaagaaaaact |
15964110 |
T |
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| Q |
334 |
ccaattttgaatctcttgatctttatctccaccaccatgaaccatcaaatgatttcttggcttgtatagatcataaggctcccaaagtgaatctaaagga |
433 |
Q |
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| T |
15964111 |
ccaattttgaatctcttgatctttatctccaccaccatgaaccatcaaatgatttcttggcttgtatagatcataaggctcccaaagtgaatctaaagga |
15964210 |
T |
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| Q |
434 |
caagcttttt |
443 |
Q |
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|||||||||| |
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| T |
15964211 |
caagcttttt |
15964220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 15963774 - 15963924
Alignment:
| Q |
1 |
ctgtctatcattctgcaaattatctggcacatacaatcaatggtgtccccatacaacagaactttacccacccaccaaaattgttccaaataatggaacc |
100 |
Q |
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| T |
15963774 |
ctgtctatcattctgcaaattgtctggcacatacaatcaatggtgtccccatacaacagaactttacccacccaccaaaattgttccaaataatggaacc |
15963873 |
T |
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| Q |
101 |
ccccatcagaaaaaagaatcaaatttcacatgtaaatcacaagaattaacc |
151 |
Q |
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| T |
15963874 |
ccccatcagaaaaaagaatcaaatttcacatgtaaatcacaagaattaacc |
15963924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1450 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold1450
Description:
Target: scaffold1450; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 283 - 325
Target Start/End: Original strand, 530 - 572
Alignment:
| Q |
283 |
taatcacaacaaatcatgagcataaccaaccaaaattgaagaa |
325 |
Q |
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| T |
530 |
taatcacaataaatcatgagcatatccaaccaaaatggaagaa |
572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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