View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9077_low_39 (Length: 420)
Name: NF9077_low_39
Description: NF9077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9077_low_39 |
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Alignment Details
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 411
Target Start/End: Complemental strand, 48013975 - 48013558
Alignment:
| Q |
1 |
tatccttatccacggtaaattcatatagtataaactcgccattgattagtttaaaatgattaattatattttagcactaaaacaatgattgatatttcaa |
100 |
Q |
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| T |
48013975 |
tatccttatccacggtaaattcatctagtataaactcgccattgattagtttaaaatgattaat---attttagcactaaaacaatgattgatatttcaa |
48013879 |
T |
|
| Q |
101 |
aagtagtaattataaataaattgtgaaatagaactgtatgctattacagcatgcatgtagattttgttagtttgatagagtcggttaaaacttagttggt |
200 |
Q |
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| T |
48013878 |
aagtagtaattataaataaattgtgaaatagaactgtatgctattacagtatgcatgtagattttgttagtttgatagagtcggttaaaacttagttggt |
48013779 |
T |
|
| Q |
201 |
taattgctttttatctggagagtttattgaatcagtttattatcttttcaatatgattatttcttttaagattctatctcattgatccaaaaatgttcga |
300 |
Q |
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| T |
48013778 |
taattgctttttatctggagagtttattgaatcagttcattatcttttcaatatgattatttcttttaagattctatctcattgatccaaaaatgttcga |
48013679 |
T |
|
| Q |
301 |
acgagatgattgtt----------attaacgatcatgagtttgaattgaaactnnnnnnntatgattgttataaaatcctatttcgaattctatttggat |
390 |
Q |
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| T |
48013678 |
acgagatgattgttatttcttttaattaacgatcatgagtttgaattcaaactaaaaaaatatgattgttataaaatcctatttcgaattctatttggat |
48013579 |
T |
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| Q |
391 |
agtgattattctaagaattat |
411 |
Q |
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| T |
48013578 |
agtgattattctaagaattat |
48013558 |
T |
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