View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9077_low_4 (Length: 720)
Name: NF9077_low_4
Description: NF9077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9077_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 643; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 643; E-Value: 0
Query Start/End: Original strand, 51 - 705
Target Start/End: Complemental strand, 34860584 - 34859930
Alignment:
| Q |
51 |
aattgatctccctacttaaatacaacaaatctttttaccacttctctgaaaaagcagacttcaaagagtggtatttggaatttttctcggttgttactct |
150 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34860584 |
aattgatctccctactcaaatacaacaaatctttttaccacttctctgaaaaagcagacttcaaagagtggtatttggaatttttctcggttgttactct |
34860485 |
T |
|
| Q |
151 |
gtgagttagttctgttgttaatttgaatattgtggcatgtaagagtcgcctattctaaagatattagctggcttgccttgacatgatggataatttctct |
250 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34860484 |
gtgagttagttctgttgttaatttgaatattgtggcatgtaagagtcacctattctaaagatattagctggcttgccttgacatgatggataatttctct |
34860385 |
T |
|
| Q |
251 |
attttaacagtcttccctacataaatactactctatctgttgcataaatactctcggtgatgaatccaccaagaaaatttgcaagtaaaccttcagaaag |
350 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34860384 |
attttaacagtcttccctacataaatactactctatctgttgcataaatactctcggtgatgaatccaccaagaaaatttgcaagtaaaccttcagaaag |
34860285 |
T |
|
| Q |
351 |
gaccaattttgttttttaatcctagtactacataactttgtttgcacttgttgtattgaatgtcattcattacaagaatcaaatatttgcaagtcattgg |
450 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34860284 |
gaccaattttgttttttaatcctagtactacataactttgtttgcacttgttgtattgaatgtcattcattacaagaatcaaatatttgcaagtcattgg |
34860185 |
T |
|
| Q |
451 |
atttagactatgcttaaaactgatatcatatttcggaagctggaatggactgtgattataggttccttctcatgtgctgatgatagcgctacttttcccg |
550 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34860184 |
atttagactatgcttaaaactgatatcatatttcggaagctggaatggactgtgattataggttccttctcatgtgctgatgatagcgctacttttcccg |
34860085 |
T |
|
| Q |
551 |
ttacttcacttgaggatgctcgtagaattccataggatctattgtctcttatgtgtaggtgcatatctgaaactcaccagatgtgtgttactccaacgga |
650 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34860084 |
ttacttcacttgaggatgctcgtagaattccataggatctattgtcgcttatgtgtaggtgcatatctgaaactcaccagatgtgtgttactccaacgga |
34859985 |
T |
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| Q |
651 |
gttcatacgtaggaagctagatgtttttgaagatccttattgctcgtcttctgtg |
705 |
Q |
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| T |
34859984 |
gttcatacgtaggaagctagatgtttttgaagatccttattgctcgtcttctgtg |
34859930 |
T |
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Back To:
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Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 51 - 137
Target Start/End: Original strand, 2242506 - 2242594
Alignment:
| Q |
51 |
aattgatctccctacttaaatacaacaaatctttttaccacttctctgaaaaagcag--acttcaaagagtggtatttggaatttttct |
137 |
Q |
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||||||||||| |||| ||||||||| |||||||| ||||||||||| | ||||||| | ||||||||||||||| || || |||||| |
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| T |
2242506 |
aattgatctccttactcaaatacaactaatcttttgaccacttctctaacaaagcagataattcaaagagtggtatgtgcaagttttct |
2242594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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