View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9077_low_42 (Length: 419)
Name: NF9077_low_42
Description: NF9077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9077_low_42 |
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Alignment Details
Target: chr2 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 17 - 409
Target Start/End: Complemental strand, 19004532 - 19004146
Alignment:
| Q |
17 |
atttcaagtttctatttgaagctaattgctcagagtatcaactagagtttaacaactatcaagcaagaaactaaggagtagaaatatttaatttgcaact |
116 |
Q |
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| T |
19004532 |
atttcaagtttctatttggagctaattgctcagagtatcaactagagtgtaacaactatcaagcaagaaactaaggagtagaaatattt-----gcaact |
19004438 |
T |
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| Q |
117 |
tgtaatatatcttcattttatttcttatcaactaatttatagtaaatttgaaggtaggagtggtctaacaatatgggttcaaggcgtattcttttcaaca |
216 |
Q |
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| T |
19004437 |
tgtaatatatcttcattttatttcttatcaattaatttatagtaaatttgaaggtaggagtggtctaacaatatgggttcaaggcgtattcttttgaaca |
19004338 |
T |
|
| Q |
217 |
agggatttaagcgtcgtccacaattgatgtgcattgttataagttgatacatgctcaaacaagtttcaatcaatgtatttttgaattacatctattacct |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
19004337 |
agggatttaagcgtcgtccacaattgatgtgcattgttataagttgatacatgctcaaacaagtttcaatcaatgtatttttgaatcacatctattacct |
19004238 |
T |
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| Q |
317 |
tcttatttagggtatcccaatctttgtcggtctttctatcaagtttaccttccttccctaggtgattggctcatgcaagtctttctagtataa |
409 |
Q |
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| T |
19004237 |
tcttatttagggtatcccaatctttgtcggtctttctatcaagtttaccttcctt-cctaggtgattggctcatgcaagtctttctagtataa |
19004146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 297
Target Start/End: Complemental strand, 33808776 - 33808726
Alignment:
| Q |
247 |
gcattgttataagttgatacatgctcaaacaagtttcaatcaatgtatttt |
297 |
Q |
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| T |
33808776 |
gcattggtatcagttgatacatgctcgaacaagcttcgatcaatgtatttt |
33808726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 297
Target Start/End: Complemental strand, 33812430 - 33812380
Alignment:
| Q |
247 |
gcattgttataagttgatacatgctcaaacaagtttcaatcaatgtatttt |
297 |
Q |
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|||||| ||| ||||||||||||||| |||||| ||| ||||||||||||| |
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| T |
33812430 |
gcattggtatcagttgatacatgctcgaacaagcttcgatcaatgtatttt |
33812380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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