View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9077_low_43 (Length: 413)
Name: NF9077_low_43
Description: NF9077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9077_low_43 |
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Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 11 - 370
Target Start/End: Complemental strand, 27547223 - 27546866
Alignment:
| Q |
11 |
cacagagaaaacaattgttttgaaataaattttttaaattagttttatttatagggataaagatcgatcaccccatagatatgaaagaatggtcatagaa |
110 |
Q |
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| T |
27547223 |
cacagagaaaacaattgttttgaaataaattttttgaattagttttatttatagggataaagatcgatcacaccatagatatgaaagaatgctcatagaa |
27547124 |
T |
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| Q |
111 |
aatatcacaagtcacaactttatgtttatgcggtgtggtaagatcaaaatttgtatgattcttactttggttctatatataag-nnnnnnnttatatcaa |
209 |
Q |
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| T |
27547123 |
aatatcacaagtcacaactttatgtttatgcggtgtggtacgatcaaaatttgtatgattcttactttggttctatatataagaaaaaaaattatatcaa |
27547024 |
T |
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| Q |
210 |
taagtatttgatcaaaattttgaactaaataaatttatttattttgatctaactttctctagtatacaagatgcttaaatgtgattttggtcccaaatca |
309 |
Q |
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| T |
27547023 |
taagtatttgatc-aaattttgaactaaataaatttatttattttgatctaactttctctagtatacaagatgcttaaatgtgattttagtcccaaatca |
27546925 |
T |
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| Q |
310 |
aaaatcaacacattcttctccccaactcttatttttgtcgagcttgtatgcaatggctgct |
370 |
Q |
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| T |
27546924 |
aaaatca--acattcttctcaccaactcttatttttgtcgagcttgtatgcaatggctgct |
27546866 |
T |
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