View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9077_low_45 (Length: 407)
Name: NF9077_low_45
Description: NF9077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9077_low_45 |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-171; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 13 - 385
Target Start/End: Original strand, 53488216 - 53488587
Alignment:
| Q |
13 |
tttggtggtgcatgcttttaagaatgctgctaaaattccttggttttactaatttgagtagttgttaaaatgcttccaatatttttgaacataataataa |
112 |
Q |
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| T |
53488216 |
tttggtgatgcatgcttttaagaatgctgctaaaattccttggttttattaatttgagtagttgttaaaatgcttccaatatttttgaacataataataa |
53488315 |
T |
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| Q |
113 |
ctcaaatgacatagcttaaagaatgatggcaatcgaaagatggttnnnnnnnnntgcacacatatgttacaagtaataaactattaaaagttgtactcct |
212 |
Q |
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| T |
53488316 |
ctcaaatgacatagcttaaagaatgatggcaatcgaaagatggttaaaaaaaa-tgcacacatattttacaggtaataaactagtaaaagttgtactcct |
53488414 |
T |
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| Q |
213 |
cttaattcttatgagttggtacggacaatgcattctagaggaagaccctgagggaatcgtttaaggtcattgcaataattgtaaatcatgtaattcttct |
312 |
Q |
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| T |
53488415 |
cttaattcttatgagttggtacggacaatgcattccaaagggagaccctgagggaatcgtttaaggtcattgcagtaattgtaaatcatgtaattcttct |
53488514 |
T |
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| Q |
313 |
ggacccatttgagtcttttctgatttgtagaatccagttgttgatacaaccaagcattgtcagaagaagagtt |
385 |
Q |
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| T |
53488515 |
ggacccatttgagtcttttctgatttgtagaatccagttgttgatacaaccaagcattgtcagaagaagagtt |
53488587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 325
Target Start/End: Complemental strand, 53493312 - 53493228
Alignment:
| Q |
241 |
tgcattctagaggaagaccctgagggaatcgtttaaggtcattgcaataattgtaaatcatgtaattcttctggacccatttgag |
325 |
Q |
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| T |
53493312 |
tgcattcttgaggaagaccctgaggaaatcttttgttatcactgcagtaattatagatcatgtaattcttctgaacccacttgag |
53493228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 278 - 313
Target Start/End: Complemental strand, 53495619 - 53495584
Alignment:
| Q |
278 |
gtcattgcaataattgtaaatcatgtaattcttctg |
313 |
Q |
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| T |
53495619 |
gtcagtgcaataattgtaaatcatgtaattcttctg |
53495584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 283 - 321
Target Start/End: Complemental strand, 52591310 - 52591272
Alignment:
| Q |
283 |
tgcaataattgtaaatcatgtaattcttctggacccatt |
321 |
Q |
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| T |
52591310 |
tgcaataattgtaaatcatgtaattcttttgcacccatt |
52591272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 322
Target Start/End: Complemental strand, 53502700 - 53502660
Alignment:
| Q |
282 |
ttgcaataattgtaaatcatgtaattcttctggacccattt |
322 |
Q |
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| T |
53502700 |
ttgcagtaattgtatatcatgtaattcttctgcacccattt |
53502660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 348
Target Start/End: Complemental strand, 37189239 - 37189131
Alignment:
| Q |
240 |
atgcattctagaggaagaccctgagggaatcgtttaaggtcattgcaataattgtaaatcatgtaattcttctggacccatttgagtcttttctgatttg |
339 |
Q |
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||||||||| |||||||||||||||| |||| ||| ||| |||| || ||||| ||||| ||||||||||| ||||| ||||| || | ||| ||| |
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| T |
37189239 |
atgcattcttgaggaagaccctgaggaaatcttttggtatcagtgcagtagttgtagatcatataattcttctgcacccacttgagcctctcatgacttg |
37189140 |
T |
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| Q |
340 |
tagaatcca |
348 |
Q |
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| T |
37189139 |
tagaatcca |
37189131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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