View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9077_low_50 (Length: 380)
Name: NF9077_low_50
Description: NF9077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9077_low_50 |
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Alignment Details
Target: chr1 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 21 - 366
Target Start/End: Original strand, 1590570 - 1590915
Alignment:
| Q |
21 |
agtagtagcatccaaaattagcatccaaaattaccacttatccctaacatggaaaacattagggttttttatgacaatatcatacatatgtatggaattg |
120 |
Q |
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| T |
1590570 |
agtagtagcatccaaaattagcatccaaaattaccacttatccctaacatggaaaacattagggttttttatgacaatatcatacatatgtatggaattg |
1590669 |
T |
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| Q |
121 |
aacttggagaaatctttaggtagagaaattaggtcaatagaacagtgtttatgaaattggtataaatcaacatctccatcatagtacctctcccaaccta |
220 |
Q |
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| T |
1590670 |
aacttggagaaatctttaggtagagaaattaggtcaatagaacagtgtttatgaaattggtataaatcaacatctccatcatagtacctctcccaaccta |
1590769 |
T |
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| Q |
221 |
aaccaatcaatattctctcaagaaaagcataagaagttaccacttcccctgtgggcaagtgaaccaacatcttcctcttcccatgccttacttccgattc |
320 |
Q |
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| T |
1590770 |
aaccaatcaatattctctcaagaaaagcataagaagttaccacttcccctgtgggcaagtgaaccaacatcttcctcttcccatgccttacttccgattc |
1590869 |
T |
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| Q |
321 |
tgcttgaggattctcgaccaatcgaaacacgccattcttgaacacc |
366 |
Q |
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| T |
1590870 |
tgcttgaggattctcgaccaatcgaaacacgccattcttgaacacc |
1590915 |
T |
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