View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9077_low_51 (Length: 356)
Name: NF9077_low_51
Description: NF9077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9077_low_51 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 165; Significance: 3e-88; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 157 - 356
Target Start/End: Original strand, 42085358 - 42085562
Alignment:
| Q |
157 |
gaataaagaattaaacattaatagagtcgttgtagaatgtat-----catacatcaatttgatccctaaatcgtgaaaaggagtaaattgataaatgata |
251 |
Q |
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| T |
42085358 |
gaataaagaattaaacattaatacagtcgttgtagaatgtatcgtatcatacatcaatttgatccctaaatcgtgaaaaggggtaaattgataaatgatg |
42085457 |
T |
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| Q |
252 |
taattttcagtaacaatatcaaattgataataggttaacttcaaaatcaaacaccacaacagaaacatgaatcagaaaaacaaaaccctaatcctgataa |
351 |
Q |
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| T |
42085458 |
taattttcagtaacaatatcaaattgataataggttaacttcaaaatcaaacaccacaacagaaacatgaatcggaaaaacaaaactctaatcctgataa |
42085557 |
T |
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| Q |
352 |
tttga |
356 |
Q |
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||||| |
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| T |
42085558 |
tttga |
42085562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 15 - 103
Target Start/End: Original strand, 42085216 - 42085304
Alignment:
| Q |
15 |
cattttcattcctaaattcctatggcacaatactataacagattaacagaagaccacacatattcgaattacacactgcactatttact |
103 |
Q |
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| T |
42085216 |
cattttcattcctaaattcctatgacacaatactataacagattaacagaagaccacacatattcgaattacacactgcactatttact |
42085304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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