View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9077_low_55 (Length: 353)
Name: NF9077_low_55
Description: NF9077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9077_low_55 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 18 - 353
Target Start/End: Complemental strand, 35518458 - 35518123
Alignment:
| Q |
18 |
actttatatttatttgttcgttttaatttatgtaccctgaccctccctgaatacattttaatgaagagaagcttgatctggaattaaatttctcacacca |
117 |
Q |
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| T |
35518458 |
actttatatttatttgttctttttaatttatgtaccctgaccctccctgaatacattttaatgaagagaagcttgatctggaattaaatttctcacacca |
35518359 |
T |
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| Q |
118 |
acaacatccatcttccattaatatttaatagtccatcctataagaattcctgaagtacagtatttacctaccaataacatattttgcatgaacaaaggat |
217 |
Q |
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| T |
35518358 |
acaacatccatctttcattaatatttaatagtccatcctataagaattcctgaagtacagtatttacctaccaataacatattttgcatgaacaaaggaa |
35518259 |
T |
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| Q |
218 |
tacacgtggagcatatagatagtgtgacaaagattcaaagaaaagaggttggttgagagtgttaacctgtgtgaagaagaagtgacggcaaagtccaccc |
317 |
Q |
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| T |
35518258 |
tacacgtggagcatatagatagtgtgacaaagattcaaagaaaagaggttggttgagagtgttaacctgtgtgaagaagaagtgacggcaaagtccaccc |
35518159 |
T |
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| Q |
318 |
aacggttctcatgacggtgccatttgatgatgtgtc |
353 |
Q |
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| T |
35518158 |
aacggttctcatgacggtgccatttgatgatgtgtc |
35518123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 268 - 353
Target Start/End: Complemental strand, 35523806 - 35523721
Alignment:
| Q |
268 |
ggttgagagtgttaacctgtgtgaagaagaagtgacggcaaagtccacccaacggttctcatgacggtgccatttgatgatgtgtc |
353 |
Q |
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| T |
35523806 |
ggttgtgagtgttaacctgtgtggagaagaagtgacggcaaagtcctcccaacggttttgatgatggtgccatttgatgatgtgtc |
35523721 |
T |
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