View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9077_low_57 (Length: 337)
Name: NF9077_low_57
Description: NF9077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9077_low_57 |
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Alignment Details
Target: chr5 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 2568138 - 2567821
Alignment:
| Q |
1 |
gtttgacgcattcaatattttgaggaaactgagaactgaaacttcaattctcgctcgaacctgcatgaatcgaaatgaaattgaagcttactgaagagaa |
100 |
Q |
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| T |
2568138 |
gtttgacgcattcaatattttgaggaaactgagaactgaaacttcaattctcgctcgaacctgcatgaatcgaaatgaaattgaagcttattgaagagaa |
2568039 |
T |
|
| Q |
101 |
tttagaaagaggactgaattgatgatgaaagtgtgaaagagtgtttgttattacctgagaaggaggaacgatatcggcgtaacagagctcttgatcggtg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2568038 |
tttagaaagaggactgaattgatgatgaaagtgtgaaagagtgtttgttattacctgagaaggaggaacgatatcggcgtaacagagctcttgatcggtg |
2567939 |
T |
|
| Q |
201 |
aaaaactttagcgacgaatttcgaagatcttccattggagaaagtgaaatgaaatggtttttcgaaattttgattgcagtgtgatttggcgcgcaaatct |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2567938 |
aaaaactttagcgacgaatttcgaagatcttccattggagagagtgaaataaaatggtttttcgaaattttgattgcagtgtgatttggcgcgcaaatct |
2567839 |
T |
|
| Q |
301 |
gaagaatgtgatcgtttt |
318 |
Q |
| |
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|||||||||||||||||| |
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| T |
2567838 |
gaagaatgtgatcgtttt |
2567821 |
T |
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