View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9077_low_65 (Length: 313)

Name: NF9077_low_65
Description: NF9077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9077_low_65
NF9077_low_65
[»] chr1 (5 HSPs)
chr1 (11-185)||(31070938-31071110)
chr1 (83-185)||(229445-229547)
chr1 (108-185)||(50525699-50525776)
chr1 (11-82)||(229077-229148)
chr1 (11-62)||(50525786-50525837)
[»] chr2 (1 HSPs)
chr2 (49-185)||(5590640-5590774)
[»] chr3 (4 HSPs)
chr3 (18-125)||(27405084-27405189)
chr3 (206-282)||(24672909-24672982)
chr3 (206-281)||(24656537-24656609)
chr3 (192-307)||(24677035-24677147)
[»] chr5 (1 HSPs)
chr5 (83-185)||(38919564-38919666)
[»] chr7 (1 HSPs)
chr7 (70-157)||(38130442-38130527)


Alignment Details
Target: chr1 (Bit Score: 140; Significance: 2e-73; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 11 - 185
Target Start/End: Complemental strand, 31071110 - 31070938
Alignment:
Q  11 agcagagaagaatgtatatcactgttttgcttctctagacgtttatataatagccaagtttatgttttattatataaaatattgtaaggtagtacccatt 110  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||    
T  31071110 agcaaagaagaatgtatatcactgttttgcttctctaaacgtttatataatcgccaagtttatgttttattata--aaatattgtaaggtagtacccatt 31071013  T
Q  111 aaaagagaataccacctttagttgagagtgtcgtgcaaattcgtgtgttaacttgtcgtaccgtatagcaactct 185  Q
    ||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  31071012 aaaagagaataccacctttagttgaaagtgccgtgcaaattcgtatgttaacttgtcgtaccgtatagcaactct 31070938  T

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Target: chr1; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 83 - 185
Target Start/End: Original strand, 229445 - 229547
Alignment:
Q  83 tataaaatattgtaaggtagtacccattaaaagagaataccacctttagttgagagtgtcgtgcaaattcgtgtgttaacttgtcgtaccgtatagcaac 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  229445 tataaaatattgtaaggtagtacccattaaaagagaataccacctttagttgagagtgtcgtgcaaattcgtgtgttaacttgtcgtaccgtataacaac 229544  T
Q  183 tct 185  Q
    |||    
T  229545 tct 229547  T

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Target: chr1; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 108 - 185
Target Start/End: Complemental strand, 50525776 - 50525699
Alignment:
Q  108 attaaaagagaataccacctttagttgagagtgtcgtgcaaattcgtgtgttaacttgtcgtaccgtatagcaactct 185  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  50525776 attaaaagagaataccacctttagttgagagtgtcgtgcaaattcgtgttttaacttgtcgtaccgtatagcaactct 50525699  T

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Target: chr1; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 229077 - 229148
Alignment:
Q  11 agcagagaagaatgtatatcactgttttgcttctctagacgtttatataatagccaagtttatgttttatta 82  Q
    |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  229077 agcaaagaagaatgtatataactgttttgcttctctagacgtttatataatagccaagtttatgttttatta 229148  T

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Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 62
Target Start/End: Complemental strand, 50525837 - 50525786
Alignment:
Q  11 agcagagaagaatgtatatcactgttttgcttctctagacgtttatataata 62  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  50525837 agcaaagaagaatgtatatcactgttttgcttctctagacgtttatataata 50525786  T

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Target: chr2 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 49 - 185
Target Start/End: Original strand, 5590640 - 5590774
Alignment:
Q  49 acgtttatataatagccaagtttatgttttattatataaaatattgtaaggtagtacccattaaaagagaataccacctttagttgagagtgtcgtgcaa 148  Q
    ||||||||||| || ||| | | |||||||||||||  |||||||||||||||| || ||||||||||||||||||| |  | ||||   ||||||||||    
T  5590640 acgtttatatattaaccaggatgatgttttattata--aaatattgtaaggtagcactcattaaaagagaataccacatgaaattgaagttgtcgtgcaa 5590737  T
Q  149 attcgtgtgttaacttgtcgtaccgtatagcaactct 185  Q
    ||||||||||| | |||||||||||||||||||||||    
T  5590738 attcgtgtgttgatttgtcgtaccgtatagcaactct 5590774  T

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Target: chr3 (Bit Score: 57; Significance: 8e-24; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 18 - 125
Target Start/End: Complemental strand, 27405189 - 27405084
Alignment:
Q  18 aagaatgtatatcactgttttgcttctctagacgtttatataatagccaagtttatgttttattatataaaatattgtaaggtagtacccattaaaagag 117  Q
    |||||||| |||||| ||||  |||||||| ||||||||||| || ||| ||| |||||||||||||  |||||||||||||||| ||||||||||||||    
T  27405189 aagaatgtttatcaccgtttgccttctctaaacgtttatatattaaccatgttgatgttttattata--aaatattgtaaggtagcacccattaaaagag 27405092  T
Q  118 aataccac 125  Q
    ||||||||    
T  27405091 aataccac 27405084  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 282
Target Start/End: Complemental strand, 24672982 - 24672909
Alignment:
Q  206 attcttatgagcttagagttggcttcagtcggaataaagtatcaaggttctaacactaacaaccccttccaacaatc 282  Q
    |||||||||| ||||||||| |||||| | ||||| |||||||||||||  |||||   ||||||||||||||||||    
T  24672982 attcttatgaccttagagttagcttcaattggaattaagtatcaaggtttaaacac---caaccccttccaacaatc 24672909  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 281
Target Start/End: Complemental strand, 24656609 - 24656537
Alignment:
Q  206 attcttatgagcttagagttggcttcagtcggaataaagtatcaaggttctaacactaacaaccccttccaacaat 281  Q
    |||||||||| ||||||||||| |||| | ||| ||||||| |||||||  |||||   |||||||||||||||||    
T  24656609 attcttatgaccttagagttgggttcaattggagtaaagtaccaaggtttaaacac---caaccccttccaacaat 24656537  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 307
Target Start/End: Complemental strand, 24677147 - 24677035
Alignment:
Q  192 ataaagcttatttcattcttatgagcttagagttggcttcagtcggaataaagtatcaaggttctaacactaacaaccccttccaacaatcctccccaac 291  Q
    |||||||||||   ||||| || ||||| |||||||||||  | || || |||| ||||||||| |||||   |||||| ||||||||| | |||||||     
T  24677147 ataaagcttatactattctgatcagcttggagttggcttccattggtattaagtgtcaaggttcaaacac---caacccattccaacaaccttccccaat 24677051  T
Q  292 atttttcatgtttttg 307  Q
     |||||||||||||||    
T  24677050 ttttttcatgtttttg 24677035  T

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Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 83 - 185
Target Start/End: Complemental strand, 38919666 - 38919564
Alignment:
Q  83 tataaaatattgtaaggtagtacccattaaaagagaataccacctttagttgagagtgtcgtgcaaattcgtgtgttaacttgtcgtaccgtatagcaac 182  Q
    |||||||||||||||||||  || ||||||||||||||||||| |  | ||||   ||||||||||||| ||||||| |||||||||| |||||||||||    
T  38919666 tataaaatattgtaaggtaacactcattaaaagagaataccacatgaaattgaagttgtcgtgcaaatttgtgtgttgacttgtcgtatcgtatagcaac 38919567  T
Q  183 tct 185  Q
    |||    
T  38919566 tct 38919564  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 157
Target Start/End: Original strand, 38130442 - 38130527
Alignment:
Q  70 ttatgttttattatataaaatattgtaaggtagtacccattaaaagagaataccacctttagttgagagtgtcgtgcaaattcgtgtg 157  Q
    |||||||||||||||  ||||||| ||| |||| | ||||||||||||||  |||  | |||||||  || |||||||||||||||||    
T  38130442 ttatgttttattata--aaatattataatgtagcaaccattaaaagagaaatccagttgtagttgaacgtatcgtgcaaattcgtgtg 38130527  T

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