View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9077_low_66 (Length: 313)

Name: NF9077_low_66
Description: NF9077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9077_low_66
NF9077_low_66
[»] chr8 (2 HSPs)
chr8 (167-233)||(26574026-26574092)
chr8 (150-232)||(26573813-26573895)
[»] chr5 (2 HSPs)
chr5 (265-296)||(38279217-38279248)
chr5 (154-235)||(38273944-38274025)
[»] chr3 (1 HSPs)
chr3 (202-231)||(35756369-35756398)


Alignment Details
Target: chr8 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 167 - 233
Target Start/End: Complemental strand, 26574092 - 26574026
Alignment:
Q  167 tttgaaatgtgagttgaatttgatcaagactgtgtaaacacaatttggattttataatccaaaaaac 233  Q
    ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  26574092 tttgaaatgtgagttgagtttgatcaagactatgtaaacacaatttggattttataatccaaaaaac 26574026  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 232
Target Start/End: Complemental strand, 26573895 - 26573813
Alignment:
Q  150 attttagtgatttatggtttgaaatgtgagttgaatttgatcaagactgtgtaaacacaatttggattttataatccaaaaaa 232  Q
    |||||||||||||||  ||||||||||||| ||||||| || || |||||||||||| | || | ||| ||||||| ||||||    
T  26573895 attttagtgatttataatttgaaatgtgagctgaatttaattaaaactgtgtaaacaaagttcgaattatataatctaaaaaa 26573813  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 265 - 296
Target Start/End: Complemental strand, 38279248 - 38279217
Alignment:
Q  265 ttggctggatcaaaattgagaaatcttagaga 296  Q
    ||||||||||||||||||||||||||||||||    
T  38279248 ttggctggatcaaaattgagaaatcttagaga 38279217  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 235
Target Start/End: Complemental strand, 38274025 - 38273944
Alignment:
Q  154 tagtgatttatggtttgaaatgtgagttgaatttgatcaagactgtgtaaacacaatttggattttataatccaaaaaacgt 235  Q
    |||||||||||  |||| |||||| ||| ||||||||||  |||||| ||||||| || ||| ||| ||||| |||||||||    
T  38274025 tagtgatttataatttggaatgtgggttaaatttgatcataactgtgaaaacacagttcggactttttaatcaaaaaaacgt 38273944  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 231
Target Start/End: Complemental strand, 35756398 - 35756369
Alignment:
Q  202 aaacacaatttggattttataatccaaaaa 231  Q
    ||||||||||||||||||||||||||||||    
T  35756398 aaacacaatttggattttataatccaaaaa 35756369  T

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