View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9077_low_7 (Length: 671)
Name: NF9077_low_7
Description: NF9077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9077_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 561; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 561; E-Value: 0
Query Start/End: Original strand, 18 - 661
Target Start/End: Complemental strand, 49691844 - 49691204
Alignment:
| Q |
18 |
gatttcttcacaaactgcggcaagattcgcttctactgctgggatactgctggacaagagaagtttggtggcctcagagatggatactagtaagtttcct |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49691844 |
gatttcttcacaaactgcggcaagattcgcttctactgctgggatactgctggacaagagaagtttggtggcctcagagatggatactagtaagtttcct |
49691745 |
T |
|
| Q |
118 |
cttcatttatttaaatgtatctgtgatc---agtttttgagcaatcttgtggttacctgtttaaccaaattccctgttcggtttatgtaacgccttaaat |
214 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
49691744 |
cttcatttatttaaatgtatctgtgatctcgagtttttgagcaatcttgtggttacctgtttaaccaaattccctgttcggtttatgtaacac-ttaaat |
49691646 |
T |
|
| Q |
215 |
cagatttgtttagatgtttcgtgctctcgtttgtttgaatttatgtattgtgttttcaagtggtagttgtagcctgttaaatcaaatgatccatgcggtt |
314 |
Q |
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|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
49691645 |
cagatttgtttagatgtttcgt-----catttgtttgaatttatgtattgtgttttcaagtggtagttgtagcctgttaaatcaaatgatccatgtggtt |
49691551 |
T |
|
| Q |
315 |
tatatatcacttaaatcaaatttgaagcagtcttctacttgcatgttgtgaaccttcacttcagctatgaatttaaagcttgtctgttgtcagtcatctg |
414 |
Q |
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|||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49691550 |
tatatatcacttaaatcaaatttgaagcagtcctctacttgtatgttgtgagccttcacttcagctatgaatttaaagcttgtctgttgtcagtcatctg |
49691451 |
T |
|
| Q |
415 |
ttcctgttttttgtgccaatattacatgatgaattgcacatgagattgagtttctttatcatattattgtgctggccataaactgactttgccctcttaa |
514 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
49691450 |
ttcctgttttttgtgccaatattacatgatgaattgcacatgagattgagtttctttatcatattattgtgctggccgtaaactgactttgccctcttaa |
49691351 |
T |
|
| Q |
515 |
cgtatactacatatttaaggatcttaaatgtagactttgtttcatgttaataagggtagctgtttcttggttatcacacacttgcatgcatcagtatttt |
614 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49691350 |
cgtatactacatatttaaggatcttaaatgtagactttgtttcatgttaataagggtagctgtttcttggttatcacacacttgcatgcatcagtatttt |
49691251 |
T |
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| Q |
615 |
ggttactacatgtaaattacttgctttcgcagccgtgatgtccatct |
661 |
Q |
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|| |||||| |||||||||||||||||||||||||| |||| ||||| |
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| T |
49691250 |
gggtactacgtgtaaattacttgctttcgcagccgttatgtacatct |
49691204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 18 - 125
Target Start/End: Complemental strand, 49696983 - 49696876
Alignment:
| Q |
18 |
gatttcttcacaaactgcggcaagattcgcttctactgctgggatactgctggacaagagaagtttggtggcctcagagatggatactagtaagtttcct |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
49696983 |
gatttcttcacaaactgcggcaagattcgcttctactgctgggatactgctggacaagagaagtttggtggtctcagagatggatactagtaagtttcct |
49696884 |
T |
|
| Q |
118 |
cttcattt |
125 |
Q |
| |
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| |||||| |
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| T |
49696883 |
catcattt |
49696876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 18 - 125
Target Start/End: Complemental strand, 49686321 - 49686214
Alignment:
| Q |
18 |
gatttcttcacaaactgcggcaagattcgcttctactgctgggatactgctggacaagagaagtttggtggcctcagagatggatactagtaagtttcct |
117 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
49686321 |
gatttcttcacaaactgcggaaagattcggttctactgctgggatactgctggacaagagaagtttggtggcctcagagatggatactagtaagtctcct |
49686222 |
T |
|
| Q |
118 |
cttcattt |
125 |
Q |
| |
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|||||||| |
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|
| T |
49686221 |
cttcattt |
49686214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 22 - 125
Target Start/End: Original strand, 45403351 - 45403456
Alignment:
| Q |
22 |
tcttcacaaactgcggcaagattcgcttctactgctgggatactgctggacaagagaagtttggtggcctcagagatgg--atactagtaagtttcctct |
119 |
Q |
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|||||||||||| |||||||||| |||||||||| ||||||||||||||| | |||||||||||||||||||||||||| ||| |||||||| |||||| |
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| T |
45403351 |
tcttcacaaactacggcaagatttgcttctactgttgggatactgctggataggagaagtttggtggcctcagagatggatatattagtaagtctcctct |
45403450 |
T |
|
| Q |
120 |
tcattt |
125 |
Q |
| |
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|||||| |
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| T |
45403451 |
tcattt |
45403456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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