View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9077_low_73 (Length: 276)
Name: NF9077_low_73
Description: NF9077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9077_low_73 |
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Alignment Details
Target: chr6 (Bit Score: 177; Significance: 2e-95; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 28 - 232
Target Start/End: Original strand, 2049370 - 2049573
Alignment:
| Q |
28 |
tgtgacactgcatatcaaaggtcaaatgttgtttacaattttgttaatttgaaaatgccatgacttgtagatgcccgccatttgcttagggaattaaaaa |
127 |
Q |
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| T |
2049370 |
tgtgacactgaatatcaaaggtcaaatgttgtttacaattttgttattttgaacatgccatgacttgtagatgcccgccatttgcttagggaattaaaaa |
2049469 |
T |
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| Q |
128 |
taactgagttatgtttggattgttatatttttatgctattctacttttactgctgttatctcacagcattgtttctaccaagcattggttagcataaagt |
227 |
Q |
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| T |
2049470 |
-aactgagttatgtttggattgttatatttttatgctattctacttttactgctgttatctcacagcattgtttctactaagcattggttagcataatgt |
2049568 |
T |
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| Q |
228 |
cacga |
232 |
Q |
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||||| |
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| T |
2049569 |
cacga |
2049573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 33 - 127
Target Start/End: Original strand, 2059635 - 2059728
Alignment:
| Q |
33 |
cactgcatatcaaaggtcaaatgttgtttacaattttgttaatttgaaaatgccatgacttgtagatgcccgccatttgcttagggaattaaaaa |
127 |
Q |
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| T |
2059635 |
cactacatgtcaaaggttaaatgttgtttacaatattgttaatttgaatatgccactatttgtagatg-ccaccatttgcttagggatttaaaaa |
2059728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 93
Target Start/End: Original strand, 2055472 - 2055534
Alignment:
| Q |
30 |
tgacactgcatatcaaaggtcaaatgttgtttacaattttgttaatttgaaaatgccatgactt |
93 |
Q |
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| T |
2055472 |
tgacaatgcatgtcaaaggtcaattgttgtttacaattttg-taatttgaacatgccatgactt |
2055534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 90
Target Start/End: Original strand, 2103474 - 2103533
Alignment:
| Q |
31 |
gacactgcatatcaaaggtcaaatgttgtttacaattttgttaatttgaaaatgccatga |
90 |
Q |
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| T |
2103474 |
gacactccatgtcaaaggtcgaatgttgtttacaattttgtcaatttgaacatgccatga |
2103533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 99
Target Start/End: Original strand, 2042750 - 2042813
Alignment:
| Q |
36 |
tgcatatcaaaggtcaaatgttgtttacaattttgttaatttgaaaatgccatgacttgtagat |
99 |
Q |
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| T |
2042750 |
tgcatgtcaaaggtcaaatgttgtttacaatttcatcaatttgtacgtgccacgacttgtagat |
2042813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 28 - 90
Target Start/End: Complemental strand, 39182226 - 39182164
Alignment:
| Q |
28 |
tgtgacactgcatatcaaaggtcaaatgttgtttacaattttgttaatttgaaaatgccatga |
90 |
Q |
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| T |
39182226 |
tgtgacactgcatgtcaaaagtcaaatgttgtttacaattttgtcaatttgaacatgccatga |
39182164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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