View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9077_low_80 (Length: 235)
Name: NF9077_low_80
Description: NF9077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9077_low_80 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 17 - 219
Target Start/End: Complemental strand, 29225816 - 29225614
Alignment:
| Q |
17 |
agaggttttggtaaccaactgcattgtttccttgttgtctaaaaagagcatagtcaagaggaatgtttaccttatcaccaatataagcgaagtacggata |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29225816 |
agaggttttggtaaccaactgcattgtttccttgttgtctaaaaagagcatagtcaagaggaatgtttaccttatcaccaatataagcgaagtacggata |
29225717 |
T |
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| Q |
117 |
cacattagcaagaagtggtgctccattgttgtttaggaagtttattattggttgtatatatggttttgcttggtcactgaaaacaccatcattgggtgga |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29225716 |
cacattagcaagaagtggtgctccattgttgtttaggaagtttattattggttgtatatatggttttgcttggtcactgaaaacaccatcattgggtgga |
29225617 |
T |
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| Q |
217 |
aat |
219 |
Q |
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||| |
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| T |
29225616 |
aat |
29225614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 19 - 216
Target Start/End: Complemental strand, 29230478 - 29230281
Alignment:
| Q |
19 |
aggttttggtaaccaactgcattgtttccttgttgtctaaaaagagcatagtcaagaggaatgtttaccttatcaccaatataagcgaagtacggataca |
118 |
Q |
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|||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||| |||| || |||| | |||||||||||||||||||||| |
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| T |
29230478 |
aggtttcggtaaccaacttgattgtttccttgttgtctaaaaagagcataatcaagagaaatgctttgtttattattgatataagcgaagtacggataca |
29230379 |
T |
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| Q |
119 |
cattagcaagaagtggtgctccattgttgtttaggaagtttattattggttgtatatatggttttgcttggtcactgaaaacaccatcattgggtgga |
216 |
Q |
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|||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||| |
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| T |
29230378 |
cattggcaagaagtggtgctccattgttctttaggaagtttattattggttgtatgtatggttttgcttggtcagtgaaaacaccattattgggtgga |
29230281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 17 - 216
Target Start/End: Complemental strand, 29240992 - 29240793
Alignment:
| Q |
17 |
agaggttttggtaaccaactgcattgtttccttgttgtctaaaaagagcatagtcaagaggaatgtttaccttatcaccaatataagcgaagtacggata |
116 |
Q |
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||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||| |||| || ||||| ||| |||||||||||||||||||| |
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| T |
29240992 |
agaggttttggtacccaacatcattgtttccttgttgtttaaaaagagcatagtcaagagaaatgctttgcttattaccgatataagcgaagtacggata |
29240893 |
T |
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| Q |
117 |
cacattagcaagaagtggtgctccattgttgtttaggaagtttattattggttgtatatatggttttgcttggtcactgaaaacaccatcattgggtgga |
216 |
Q |
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|||||| ||||||||||||||||||||||| |||||||||| ||||||||| |||| |||| | |||||||||||| ||||| ||||||||||||||||| |
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| T |
29240892 |
cacattggcaagaagtggtgctccattgttctttaggaagtctattattggctgtaaatattgctttgcttggtcagtgaaagcaccatcattgggtgga |
29240793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 31 - 216
Target Start/End: Complemental strand, 29251252 - 29251067
Alignment:
| Q |
31 |
ccaactgcattgtttccttgttgtctaaaaagagcatagtcaagaggaatgtttaccttatcaccaatataagcgaagtacggatacacattagcaagaa |
130 |
Q |
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|||||| ||||||||||||||||| |||||||| |||||||||||| |||| || |||| |||||||||||||||||||||||||||||| ||||||| |
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| T |
29251252 |
ccaacttcattgtttccttgttgtttaaaaagaacatagtcaagagaaatgctttgtttattaccaatataagcgaagtacggatacacattggcaagaa |
29251153 |
T |
|
| Q |
131 |
gtggtgctccattgttgtttaggaagtttattattggttgtatatatggttttgcttggtcactgaaaacaccatcattgggtgga |
216 |
Q |
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||||||||||||| || |||||||| ||||||||||||||||| | |||||||| ||| ||||||| ||| ||||||||||| |
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| T |
29251152 |
gtggtgctccattcttcaccaggaagttaattattggttgtatataagaatttgcttgatcagtgaaaactccagcattgggtgga |
29251067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 17 - 137
Target Start/End: Original strand, 29253327 - 29253447
Alignment:
| Q |
17 |
agaggttttggtaaccaactgcattgtttccttgttgtctaaaaagagcatagtcaagaggaatgtttaccttatcaccaatataagcgaagtacggata |
116 |
Q |
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|||||||||| ||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||| |||||| ||||||||||||||||||| |
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| T |
29253327 |
agaggttttgataaccaactgcattgtttccttgttgtttaaaaagagcaaaatcaagaggaatgttttgtggatcaccgatataagcgaagtacggatg |
29253426 |
T |
|
| Q |
117 |
cacattagcaagaagtggtgc |
137 |
Q |
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|||||| |||||||||||||| |
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| T |
29253427 |
cacatttgcaagaagtggtgc |
29253447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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