View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9077_low_81 (Length: 222)
Name: NF9077_low_81
Description: NF9077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9077_low_81 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 169; Significance: 8e-91; HSPs: 12)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 3 - 219
Target Start/End: Original strand, 14025405 - 14025621
Alignment:
| Q |
3 |
aatgcttgcagttttacaagtgatcccattgaagtaggaatcttccctgaaaaattgttgttgctcaaatctacataaactaatgacttgaaattgctcc |
102 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14025405 |
aatgcttgcagttctacaagtgatcccattgaagtaggaatcttccctgaaaaattgttgctgctcaaatctacataaactaatgacttgaaattgctcc |
14025504 |
T |
|
| Q |
103 |
aacagtttggaattcgtccagataattgattatttgaaacgtcgaaccgagctaacgttgcatctataccatttttacataagaatggatgagaatcaga |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| ||| ||| | ||||| ||||||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
14025505 |
aacagtttggaattcgtccagataattgattattcgaaaggtcaaactggcctaacactgcatctataccatttttacataggaatggaagagaatcaga |
14025604 |
T |
|
| Q |
203 |
gaatttgtttttggaca |
219 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
14025605 |
gaatttgtttttggaca |
14025621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 14015272 - 14015490
Alignment:
| Q |
1 |
gtaatgcttgcagttttacaagtgatcccattgaagtaggaatcttccctgaaaaattgttgttgctcaaatctacataaactaatgacttgaaattgct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||| |
|
|
| T |
14015272 |
gtaatgcttgcagttttacaagtgatcccattgaagtaggaatcttccctgaaaaattgttgtgactcaaatcaacataagctaatgacttgaaattgct |
14015371 |
T |
|
| Q |
101 |
ccaacagtttggaattcgtccagataattgattatttgaaacgtcgaaccgagctaacgttgcatctataccatttttacataagaatggatgagaatca |
200 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||| ||| | | | ||||| ||||||||||||||||| ||||| ||||||| |||||||| |
|
|
| T |
14015372 |
ccaacagtttggaatttgtccagataattgattatttgaaaggtcaacctggcctaacattgcatctataccatttgcacataggaatggacgagaatca |
14015471 |
T |
|
| Q |
201 |
gagaatttgtttttggaca |
219 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
14015472 |
gagaatttgtttttggaca |
14015490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 13892947 - 13892729
Alignment:
| Q |
1 |
gtaatgcttgcagttttacaagtgatcccattgaagtaggaatcttccctgaaaaattgttgttgctcaaatctacataaactaatgacttgaaattgct |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| | ||||||||||| |||||||||| | |
|
|
| T |
13892947 |
gtaatgcttgcagttctacaagtgatcccattgaagtaggaatcttccctaaaaaattgttgtggctcaaatcgagataaactaatgccttgaaattgtt |
13892848 |
T |
|
| Q |
101 |
ccaacagtttggaattcgtccagataattgattatttgaaacgtcgaaccgagctaacgttgcatctataccatttttacataagaatggatgagaatca |
200 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||||||||| ||| ||| | ||||| ||| ||||||||||||| |||||| ||||||| ||||||| |
|
|
| T |
13892847 |
ccaacagtctggaactcgtccagataattgattatttgaaaggtcaaactggcctaacattgaatctataccatttgtacataggaatggaagagaatcg |
13892748 |
T |
|
| Q |
201 |
gagaatttgtttttggaca |
219 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
13892747 |
gagaatttgtttttggaca |
13892729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 13932470 - 13932688
Alignment:
| Q |
1 |
gtaatgcttgcagttttacaagtgatcccattgaagtaggaatcttccctgaaaaattgttgttgctcaaatctacataaactaatgacttgaaattgct |
100 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
13932470 |
gtaatgctcgcagtattacaagtgatcccattgaagttggaatcttccctgaaaaattgttgtggctcaaatctacataaactaatgacttgaaattgct |
13932569 |
T |
|
| Q |
101 |
ccaacagtttggaattcgtccagataattgattatttgaaacgtcgaaccgagctaacgttgcatctataccatttttacataagaatggatgagaatca |
200 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| || ||| ||||||| || ||| |||||||||| ||| | |||||| ||||||| |
|
|
| T |
13932570 |
ccaacagtctggaattcgtccagataattgattatttgaaacatcaaactgagctaagatttcatttataccatttgcacaaaggaatgggcgagaatct |
13932669 |
T |
|
| Q |
201 |
gagaatttgtttttggaca |
219 |
Q |
| |
|
|| |||||||||||||||| |
|
|
| T |
13932670 |
gaaaatttgtttttggaca |
13932688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 13862773 - 13862560
Alignment:
| Q |
1 |
gtaatgcttgcagttttacaagtgatcccattgaagtaggaatcttccctgaaaaattgttgttgctcaaatctacataaactaatgacttgaaattgct |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
13862773 |
gtaatgctcgcagttttacaagtgatcccattgaagttggaatcatccctgaaaaattgttgtgactcaaatctacataaactaatgacttgaaattgct |
13862674 |
T |
|
| Q |
101 |
ccaacagtttggaattcgtccagataattgattatttgaaacgtcgaaccgagctaacgttgcatctataccatttttacataagaatggatgagaatca |
200 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| || ||| |||||||| || |||||||| ||||| ||||| ||||| | ||||||| |
|
|
| T |
13862673 |
ccaacagtctggaattcgtccagataattgattatttgaaacatcaaactgagctaacatttcatctataacatttgcacataggaatgaacgagaatct |
13862574 |
T |
|
| Q |
201 |
gagaatttgttttt |
214 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
13862573 |
gagaatttattttt |
13862560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 14110598 - 14110817
Alignment:
| Q |
1 |
gtaatgcttgcagttttacaagtgatcccattgaagtaggaatcttccctgaaaaattgttgttgctcaaatctacataaactaatgacttgaaattgct |
100 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
14110598 |
gtaatgcttgcagattaacaagtgatcccattgaagaaggaatcttccctgaaaaattgttgtggctcaaatcaacataaaccaatgacttgaaattgct |
14110697 |
T |
|
| Q |
101 |
ccaacagtttggaattcgtccagataattgattatttgaaacgtcgaaccgagctaacgttgcatctataccatttttacataagaatggatgagaatca |
200 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||||| ||| || | ||||| || |||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
14110698 |
ccaacagtctggaattcttccagataattgattatttgaaaggtcaaattggcctaacattacatctataccatttgcacataagaatggaaaagaatca |
14110797 |
T |
|
| Q |
201 |
gagaatttgtttttggacag |
220 |
Q |
| |
|
||||| |||||||||||||| |
|
|
| T |
14110798 |
gagaacttgtttttggacag |
14110817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 13911945 - 13912163
Alignment:
| Q |
1 |
gtaatgcttgcagttttacaagtgatcccattgaagtaggaatcttccctgaaaaattgttgttgctcaaatctacataaactaatgacttgaaattgct |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
13911945 |
gtaatgcttgcagttctacaagtgatcccattgaagttggaatcttccctgaaaaattgttctggctcaaatctagataagctaatgacttgaaattgct |
13912044 |
T |
|
| Q |
101 |
ccaacagtttggaattcgtccagataattgattatttgaaacgtcgaaccgagctaacgttgcatctataccatttttacataagaatggatgagaatca |
200 |
Q |
| |
|
||| || | ||||||| ||||||||||||||||||| | || ||| ||| | ||||| |||||||||||||||| ||| | ||||||| |||||||| |
|
|
| T |
13912045 |
ccagcaatctggaatttgtccagataattgattattcggaaggtcaaactggcctaacactgcatctataccatttgcacagaggaatggaagagaatca |
13912144 |
T |
|
| Q |
201 |
gagaatttgtttttggaca |
219 |
Q |
| |
|
||||| ||||||||||||| |
|
|
| T |
13912145 |
gagaacttgtttttggaca |
13912163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 2 - 219
Target Start/End: Complemental strand, 13875242 - 13875025
Alignment:
| Q |
2 |
taatgcttgcagttttacaagtgatcccattgaagtaggaatcttccctgaaaaattgttgttgctcaaatctacataaactaatgacttgaaattgctc |
101 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||||| ||||||| |||||||| ||| |
|
|
| T |
13875242 |
taatgcttgcagttctacgagtgatcccattgaagaaggaattttccctgaaaaattgttgtggctcaaatctacataagctaatgatttgaaatttctc |
13875143 |
T |
|
| Q |
102 |
caacagtttggaattcgtccagataattgattatttgaaacgtcgaaccgagctaacgttgcatctataccatttttacataagaatggatgagaatcag |
201 |
Q |
| |
|
||||| | |||||||| ||||||||||||||||||||||| ||| ||| | |||||| | ||||||||||||||| |||||| ||| || ||| | || |
|
|
| T |
13875142 |
caacaatctggaattcttccagataattgattatttgaaaggtcaaactggcctaacgcttcatctataccattttcacataaaaattgaatagagttag |
13875043 |
T |
|
| Q |
202 |
agaatttgtttttggaca |
219 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
13875042 |
agaatttgtttttggaca |
13875025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 14084789 - 14085010
Alignment:
| Q |
1 |
gtaatgcttgcagttttacaagtgatcccattgaagtaggaatcttccctgaaaaattgttgttgctcaaatctacataaactaatgacttgaaattgct |
100 |
Q |
| |
|
|||||||||| |||| |||||||||||||| |||| |||||||||| | || |||||||||| |||||||||||||||| |||||| |||||||||||| |
|
|
| T |
14084789 |
gtaatgcttgaagttctacaagtgatcccaatgaaataggaatctttgccgagaaattgttgtggctcaaatctacataagctaatgccttgaaattgct |
14084888 |
T |
|
| Q |
101 |
ccaacagtttggaattcgtccagataattgattatttgaaacgtcgaaccgagctaacgttgcatctataccatttttacataagaatggatgagaatca |
200 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||| ||||||| ||| | | ||||| ||| |||||||||||||| ||||| ||||||| ||||||| |
|
|
| T |
14084889 |
ccaacagtctggaattcgtctagataattgattgtttgaaaggtcagaatgggctaaagttacatctataccatttgcacatatgaatggaacagaatca |
14084988 |
T |
|
| Q |
201 |
gagaatttgtttttggacagat |
222 |
Q |
| |
|
|||||| ||||||||||||| |
|
|
| T |
14084989 |
ttgaatttatttttggacagat |
14085010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 2 - 127
Target Start/End: Original strand, 14047473 - 14047598
Alignment:
| Q |
2 |
taatgcttgcagttttacaagtgatcccattgaagtaggaatcttccctgaaaaattgttgttgctcaaatctacataaactaatgacttgaaattgctc |
101 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||| |||||| ||||||||||||| |
|
|
| T |
14047473 |
taatgctcgcagttctacaagtgatcccattgaagtaggaatcttcccagaaaaattgttgtggctcaaatctagataagctaatgccttgaaattgctc |
14047572 |
T |
|
| Q |
102 |
caacagtttggaattcgtccagataa |
127 |
Q |
| |
|
||||||| ||||||| |||||||||| |
|
|
| T |
14047573 |
caacagtctggaatttgtccagataa |
14047598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 2 - 222
Target Start/End: Complemental strand, 13472939 - 13472719
Alignment:
| Q |
2 |
taatgcttgcagttttacaagtgatcccattgaagtaggaatcttccctgaaaaattgttgttgctcaaatctacataaactaatgacttgaaattgctc |
101 |
Q |
| |
|
||||||||| |||| |||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
13472939 |
taatgcttgaagttctacaagagatcccattgaagtaggaatcttccaggaaaaattgttgtgactcaaatctacataaactaatgacttgaagttgctc |
13472840 |
T |
|
| Q |
102 |
caacagtttggaattcgtccagataattgattatttgaaacgtcgaaccgagctaacgttgcatctataccatttttacataagaatggatgagaatcag |
201 |
Q |
| |
|
||||| |||||||||| ||| || |||| |||||| |||| ||| | || |||| || |||| |||| ||| ||||| ||| || ||||||||| |
|
|
| T |
13472839 |
caacaatttggaattcctcccgaaaatttattattcgaaaggtcaagttgacgtaacattatatctctaccgtttgcacataggaaagggcgagaatcag |
13472740 |
T |
|
| Q |
202 |
agaatttgtttttggacagat |
222 |
Q |
| |
|
|||| || ||||||||||||| |
|
|
| T |
13472739 |
agaacttatttttggacagat |
13472719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 160 - 222
Target Start/End: Original strand, 14047611 - 14047673
Alignment:
| Q |
160 |
ttgcatctataccatttttacataagaatggatgagaatcagagaatttgtttttggacagat |
222 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||| ||||||| |||||||| |||||||| |||| |
|
|
| T |
14047611 |
ttgcatctataccactttcacataagaatggaagagaatcggagaatttatttttggaaagat |
14047673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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