View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9077_low_84 (Length: 212)
Name: NF9077_low_84
Description: NF9077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9077_low_84 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 52584074 - 52584273
Alignment:
| Q |
1 |
atcaacaagatcttcaagaagtgactgtactggtttaaggtatctagagttcccaataacggaaccaaaactctcacttccataagaagtagaagtagaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52584074 |
atcaacaagatcttcaagaagtgactgtactggtttaaggtatctagagttcccaataacagaaccaaaactctcacttccataagaagtagaagtagaa |
52584173 |
T |
|
| Q |
101 |
cggttcaataataatgagttattattattagaacctgaagcaaaagttccacttccaccactgaaaaaataatcacttgttagattctccaccacaggtt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
52584174 |
cggttcaataataatgagttattattattagaacctgaagcaaaagttccacttccaccactgaaaaaataatcactagttagattctccaccacaggtt |
52584273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University