View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9077_low_9 (Length: 663)

Name: NF9077_low_9
Description: NF9077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9077_low_9
NF9077_low_9
[»] chr7 (1 HSPs)
chr7 (1-640)||(3979179-3979816)


Alignment Details
Target: chr7 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 1 - 640
Target Start/End: Complemental strand, 3979816 - 3979179
Alignment:
Q  1 aaactgcgacaagccnnnnnnntgtaagacatttagcgaaaaatgcaatggttttgatnnnnnnntgttgcgtaggcttgttatgcatatccggtctatg 100  Q
    |||||||||||||||       ||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||    
T  3979816 aaactgcgacaagccaaaaaaatgtaagacatttagcgaaaaatgcaatggttttgataaaaaa-tgttgcgtaggcttgttatgcatatccggtctatg 3979718  T
Q  101 tcggttcccaaaatctccaccactgcgactataaatagtggtggatatcttggcgagcccaacaccggatagaaataagttaaggtaagagtaaaacatt 200  Q
    ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  3979717 tcggttcccaacatctccaccactgcgactataaatagtggcggatatcttggcgagcccaacaccggatagaaataagttacggtgagagtaaaacatt 3979618  T
Q  201 tatttgcggggaaaaacttgtaataacagtttgcatctacaaactgtgtagtggtttgtgaccttcattttaagttttgttgtttgtgtaatgattgggg 300  Q
    |||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||| ||| || ||||||||||||||||||||| |||||||||||||    
T  3979617 tatttgtggggaaaaacttgtaataagagtttgcatctacaaactttgtagtggtttatgatctgcattttaagttttgttgtttgggtaatgattgggg 3979518  T
Q  301 atagtttatta--tcttcttgtttccaagttcatttggacttttgttatgctaataataaagtgattagtttcttactttttggtttaatatttccattt 398  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  3979517 atagtttattatctcttcttgtttccaagttcatttggacttttgttatgctaataataaagtgattagtttcttaatttttggtttaatatttccattt 3979418  T
Q  399 tgatgttgtgttgcaaacttaacgtgttttctttcttgaatctattttttattagaaaattggcctaaccnnnnnnnngt-ttctctaaagaattcaaaa 497  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||          | |||||||||||||| || |    
T  3979417 tgatgttgtgttgcaaacttaacgtgttttctttcttgaatctatttcttattagaaaattggcctaactttttttttttgttctctaaagaatttaata 3979318  T
Q  498 tccagtttatccttccacacagaaaattgtccaaacaagtatatgttttaatgggaatattcatatgagtatttttggtgaattaataagtgtgacttat 597  Q
    | ||||||||||||||||||| |||||||||||||  ||||||| ||||| |||||||||||  ||||||||||||||||||| |||||  |||||||||    
T  3979317 ttcagtttatccttccacacataaaattgtccaaaagagtatatattttactgggaatattc--atgagtatttttggtgaataaataa--gtgacttat 3979222  T
Q  598 atgttcacaagtactagctcaaccgacaaaatgtcaaaactgt 640  Q
    |||||||||||| |||||||||| || ||||||||||||||||    
T  3979221 atgttcacaagtgctagctcaactgataaaatgtcaaaactgt 3979179  T

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