View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9078_high_3 (Length: 388)
Name: NF9078_high_3
Description: NF9078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9078_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 372
Target Start/End: Complemental strand, 12120578 - 12120207
Alignment:
| Q |
1 |
tgctgcttcttgaggtggattgagagtgttgtttcctctccattagaagttaggatgatccgtctaaccagaattgtaagtgttagagtagggattactt |
100 |
Q |
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| T |
12120578 |
tgctgcttcttgaggtggattgagagtgttgtttcctctccattagaagttaggatgatccgcctaaccagaattgtaagtgttagagtagggattactt |
12120479 |
T |
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| Q |
101 |
tgttgtcttgtgtatgatcccacgtatctgacttgctcctcgaggtccaaatttcagcctgtaaaagtcttgacggacacatccagacgtatgaacttac |
200 |
Q |
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|||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
12120478 |
tgttgtcttgtgtatgatcccatgtatctgacttgttcctcgaggtccaaatttcagcctgtaaaagtcttgacggacacgtccagacgtatgaacttac |
12120379 |
T |
|
| Q |
201 |
cttccacgtcttccagtcctttctcgataagctcaagaattttatccttaaaggaaaatacatactccaacttcgcaacacctatttccaaagtagccat |
300 |
Q |
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||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||| || |
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| T |
12120378 |
cttccacgtcttctagccctttctcggtaagctcaagaattttatccttaaaggaaaatacatcctccaacttcgcaacacctagctccaatgtagctat |
12120279 |
T |
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| Q |
301 |
tatagcaacaacaggaccctcgtcaacctggtccactaagaacgcatatccactaagagccaccaacttgag |
372 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
12120278 |
tatagcaacaacaggaccctcgtcaacctggtccactaagaacacatatccactaagagccaccaacttgag |
12120207 |
T |
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