View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9078_high_9 (Length: 310)

Name: NF9078_high_9
Description: NF9078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9078_high_9
NF9078_high_9
[»] chr1 (1 HSPs)
chr1 (18-304)||(48765673-48765970)


Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 18 - 304
Target Start/End: Complemental strand, 48765970 - 48765673
Alignment:
Q  18 aaaataacttatgagttgtaagtgtttatgctataaacttttaatatgttaa-----------atttcataatcagcattttatcattgaacaaatctgt 106  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||           |||||||||||||||||||||||||||||||||||||    
T  48765970 aaaacaacttatgagttgtaagtgtttatgctataaacttttaatatgttaagttagtccctaatttcataatcagcattttatcattgaacaaatctgt 48765871  T
Q  107 gcaaaatgcagaggaaaatattgtgaacttactgtaaccaatacttgagaggctgccattagcaacataatcagaaataacaagcttttcatcttcaccc 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  48765870 gcaaaatgcagaggaaaatattgtgaacttactgtaaccaatacttgagaggctgccattaggaacataatcagaaataacaagcttttcatcttcaccc 48765771  T
Q  207 caacagaacccacgaatcttaaccaaattaggatgcttaaccttagcaatagctctcacttgattctcaaactccttcattctttcaacaccaaactc 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  48765770 caacagaacccacgaatcttaaccaaattaggatgcttaaccttagcaatagctctcacttgattctcaaactccttcattctttcaacaccacactc 48765673  T

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