View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9078_low_11 (Length: 351)

Name: NF9078_low_11
Description: NF9078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9078_low_11
NF9078_low_11
[»] chr5 (4 HSPs)
chr5 (20-175)||(3618739-3618894)
chr5 (206-334)||(3618895-3619022)
chr5 (225-309)||(7907930-7908015)
chr5 (220-285)||(13244483-13244548)
[»] scaffold0311 (1 HSPs)
scaffold0311 (230-309)||(10559-10638)
[»] chr3 (6 HSPs)
chr3 (230-309)||(27016392-27016470)
chr3 (215-285)||(26330250-26330320)
chr3 (206-263)||(30657381-30657438)
chr3 (215-263)||(20210855-20210903)
chr3 (219-263)||(41033187-41033231)
chr3 (206-262)||(44237513-44237569)
[»] chr4 (6 HSPs)
chr4 (219-309)||(2841675-2841765)
chr4 (248-309)||(9843213-9843274)
chr4 (225-290)||(18628490-18628555)
chr4 (220-301)||(46187841-46187922)
chr4 (215-263)||(22523775-22523823)
chr4 (269-309)||(27970107-27970147)
[»] scaffold0426 (1 HSPs)
scaffold0426 (225-294)||(4280-4349)
[»] chr2 (2 HSPs)
chr2 (220-293)||(40943978-40944051)
chr2 (206-302)||(6561393-6561489)
[»] scaffold0141 (1 HSPs)
scaffold0141 (215-263)||(9705-9753)
[»] chr7 (2 HSPs)
chr7 (225-332)||(33645897-33646004)
chr7 (230-302)||(23214911-23214983)
[»] chr6 (5 HSPs)
chr6 (229-309)||(10031781-10031861)
chr6 (272-315)||(20377904-20377947)
chr6 (219-302)||(27857414-27857497)
chr6 (206-264)||(7351589-7351647)
chr6 (269-310)||(31839268-31839309)
[»] chr1 (1 HSPs)
chr1 (215-309)||(4868449-4868542)
[»] chr8 (3 HSPs)
chr8 (227-332)||(26410306-26410411)
chr8 (272-309)||(27119913-27119950)
chr8 (215-331)||(6950350-6950465)


Alignment Details
Target: chr5 (Bit Score: 156; Significance: 8e-83; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 20 - 175
Target Start/End: Original strand, 3618739 - 3618894
Alignment:
Q  20 tgtactgtgctcatagttatttgggtgggggttttgtcatcatatttatgtatcttttgttagacatacccggaagcttctcttcaattatagactccaa 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3618739 tgtactgtgctcatagttatttgggtgggggttttgtcatcatatttatgtatcttttgttagacatacccggaagcttctcttcaattatagactccaa 3618838  T
Q  120 tgttagaggaggaatttgtttctttgtacaatagttatccactattattaattgac 175  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3618839 tgttagaggaggaatttgtttctttgtacaatagttatccactattattaattgac 3618894  T

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Target: chr5; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 206 - 334
Target Start/End: Original strand, 3618895 - 3619022
Alignment:
Q  206 ctgtttaacttgatttatctgagtttatctactgacataaagacttatgagactgtttacaaaagtttatgaaaacaactaatgacatatctataagttg 305  Q
    |||||||||||||||||||||||||||||| || ||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |    
T  3618895 ctgtttaacttgatttatctgagtttatctgctaacataaaaacttgtgagactgtttacaaaagtttatgaaaacaactaacgacatatctataagtag 3618994  T
Q  306 tttttggctttatttccatatgctctctg 334  Q
    |||||||| ||||||||||||||||||||    
T  3618995 tttttggc-ttatttccatatgctctctg 3619022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 309
Target Start/End: Complemental strand, 7908015 - 7907930
Alignment:
Q  225 tgagtttatctactgacataaagacttatgagactgtttacaaaagtttatgaaaacaac-taatgacatatctataagttgtttt 309  Q
    |||||||||||| | ||||||| ||||||||||||||||  || |  ||||||||||||| || ||| ||||  ||||||||||||    
T  7908015 tgagtttatctaataacataaacacttatgagactgtttggaagaacttatgaaaacaacgtactgaaatattcataagttgtttt 7907930  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 285
Target Start/End: Original strand, 13244483 - 13244548
Alignment:
Q  220 ttatctgagtttatctactgacataaagacttatgagactgtttacaaaagtttatgaaaacaact 285  Q
    |||| |||||||||||| ||| ||||| |||||||| |||||||  || || ||||||||||||||    
T  13244483 ttatttgagtttatctattgaaataaacacttatgacactgtttggaagagcttatgaaaacaact 13244548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 230 - 309
Target Start/End: Original strand, 10559 - 10638
Alignment:
Q  230 ttatctactgacataaagacttatgagactgtttacaaaagtttatgaaaacaactaatgacatatctataagttgtttt 309  Q
    |||| |||||||||||  |||| |||||||||||   |||| ||||| |||||||||||||||| || ||||||||||||    
T  10559 ttatgtactgacataagtacttgtgagactgtttgacaaagcttatgtaaacaactaatgacatgtccataagttgtttt 10638  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 230 - 309
Target Start/End: Original strand, 27016392 - 27016470
Alignment:
Q  230 ttatctactgacataaagacttatgagactgtttacaaaagtttatgaaaacaactaatgacatatctataagttgtttt 309  Q
    ||||||||||| ||||  ||||||||||||||||  || |||||||| ||||| || ||||||||||||||| |||||||    
T  27016392 ttatctactga-ataagtacttatgagactgtttcaaagagtttatggaaacagctcatgacatatctataacttgtttt 27016470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 285
Target Start/End: Original strand, 26330250 - 26330320
Alignment:
Q  215 ttgatttatctgagtttatctactgacataaagacttatgagactgtttacaaaagtttatgaaaacaact 285  Q
    ||||||||| |||| ||||||||||| ||||  | || |||||||||||| || || ||||||||||||||    
T  26330250 ttgatttatttgaggttatctactgaaataagtatttgtgagactgtttagaagagcttatgaaaacaact 26330320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 263
Target Start/End: Complemental strand, 30657438 - 30657381
Alignment:
Q  206 ctgtttaacttgatttatctgagtttatctactgacataaagacttatgagactgttt 263  Q
    |||||| | ||||||||| |||||||||||||||||||||  |||| ||||| |||||    
T  30657438 ctgtttgaattgatttatttgagtttatctactgacataagcacttttgagattgttt 30657381  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 263
Target Start/End: Original strand, 20210855 - 20210903
Alignment:
Q  215 ttgatttatctgagtttatctactgacataaagacttatgagactgttt 263  Q
    ||||||||| |||| ||||||||||||||||  |||| |||||||||||    
T  20210855 ttgatttatttgaggttatctactgacataaccacttgtgagactgttt 20210903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 263
Target Start/End: Original strand, 41033187 - 41033231
Alignment:
Q  219 tttatctgagtttatctactgacataaagacttatgagactgttt 263  Q
    ||||| ||||||||||||||||||||| ||||  |||||||||||    
T  41033187 tttatttgagtttatctactgacataaggactcgtgagactgttt 41033231  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 262
Target Start/End: Complemental strand, 44237569 - 44237513
Alignment:
Q  206 ctgtttaacttgatttatctgagtttatctactgacataaagacttatgagactgtt 262  Q
    |||||||| ||| ||||| |||||||||||||||||||||  |||| ||| ||||||    
T  44237569 ctgtttaaattggtttatttgagtttatctactgacataagcacttgtgaaactgtt 44237513  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 309
Target Start/End: Complemental strand, 2841765 - 2841675
Alignment:
Q  219 tttatctgagtttatctactgacataaagacttatgagactgtttacaaaagtttatgaaaacaactaatgacatatctataagttgtttt 309  Q
    ||||| |||||||||| | ||||||||| |||  ||||| ||||| | | ||||||||||| ||||| ||||||| || ||||||||||||    
T  2841765 tttatttgagtttatccattgacataaaaactcgtgagattgtttgcgagagtttatgaaagcaacttatgacatgtcaataagttgtttt 2841675  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 309
Target Start/End: Original strand, 9843213 - 9843274
Alignment:
Q  248 acttatgagactgtttacaaaagtttatgaaaacaactaatgacatatctataagttgtttt 309  Q
    |||| |||||||||||  || || ||| ||||||||||||| ||||||| ||||||||||||    
T  9843213 acttgtgagactgtttcaaagagattaagaaaacaactaatcacatatccataagttgtttt 9843274  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 290
Target Start/End: Original strand, 18628490 - 18628555
Alignment:
Q  225 tgagtttatctactgacataaagacttatgagactgtttacaaaagtttatgaaaacaactaatga 290  Q
    |||| ||||||||||||||||| |||| |||||||||||   | || |||||||||||||| ||||    
T  18628490 tgagcttatctactgacataaacacttgtgagactgtttgggagagcttatgaaaacaacttatga 18628555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 301
Target Start/End: Original strand, 46187841 - 46187922
Alignment:
Q  220 ttatctgagtttatctactgacataaagacttatgagactgtttacaaaagtttatgaaaacaactaatgacatatctataa 301  Q
    |||| |||| |||||||||| |||||| |||||||||||||||||  |  ||||||| |||||| | |||| || |||||||    
T  46187841 ttatttgagcttatctactggcataaacacttatgagactgtttaagagggtttatggaaacaatttatgatatgtctataa 46187922  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 263
Target Start/End: Complemental strand, 22523823 - 22523775
Alignment:
Q  215 ttgatttatctgagtttatctactgacataaagacttatgagactgttt 263  Q
    |||||||||  ||||||||||||||||||||  |||| |||||||||||    
T  22523823 ttgatttattcgagtttatctactgacataagtacttgtgagactgttt 22523775  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 309
Target Start/End: Complemental strand, 27970147 - 27970107
Alignment:
Q  269 agtttatgaaaacaactaatgacatatctataagttgtttt 309  Q
    ||||||||||||||||| ||||||| |||||||| ||||||    
T  27970147 agtttatgaaaacaacttatgacatgtctataagctgtttt 27970107  T

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Target: scaffold0426 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0426
Description:

Target: scaffold0426; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 225 - 294
Target Start/End: Complemental strand, 4349 - 4280
Alignment:
Q  225 tgagtttatctactgacataaagacttatgagactgtttacaaaagtttatgaaaacaactaatgacata 294  Q
    |||||||||||||||| | ||| | || |||||||||||  ||||||||||| |||||||| ||||||||    
T  4349 tgagtttatctactgataaaaatatttgtgagactgtttgaaaaagtttatggaaacaacttatgacata 4280  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 220 - 293
Target Start/End: Complemental strand, 40944051 - 40943978
Alignment:
Q  220 ttatctgagtttatctactgacataaagacttatgagactgtttacaaaagtttatgaaaacaactaatgacat 293  Q
    |||| |||||||||||| ||||||||  |||| ||| |||||||  ||||||||||||||||| || |||||||    
T  40944051 ttatttgagtttatctaatgacataagcacttgtgaaactgtttggaaaagtttatgaaaacagcttatgacat 40943978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 302
Target Start/End: Complemental strand, 6561489 - 6561393
Alignment:
Q  206 ctgtttaacttgatttatctgagtttatctactgacataaagacttatgagactgtttacaaaagtttatgaaaacaactaatgacatatctataag 302  Q
    |||||| | |||| |||| ||||||||||||| | ||||||  ||| || ||| ||| | || || ||||| |||||||| ||||||||||||||||    
T  6561489 ctgtttgaattgacttatttgagtttatctacgggcataaacgcttctgtgaccgttcaaaagagcttatggaaacaacttatgacatatctataag 6561393  T

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Target: scaffold0141 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 263
Target Start/End: Original strand, 9705 - 9753
Alignment:
Q  215 ttgatttatctgagtttatctactgacataaagacttatgagactgttt 263  Q
    ||||||||| |||||||||||||| ||||||| |||| |||||||||||    
T  9705 ttgatttatttgagtttatctactaacataaatacttgtgagactgttt 9753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 332
Target Start/End: Original strand, 33645897 - 33646004
Alignment:
Q  225 tgagtttatctactgacataaagacttatgagactgtttacaaa-agtttatgaaaacaactaatgacatatctataagttgtttttggctttatttcca 323  Q
    |||||||||||| |||| |||| |||| |||||||| ||  | | || ||||| |||||||| ||||||| |||||||||||||||| |  |||||||||    
T  33645897 tgagtttatctattgacgtaaaaacttgtgagactggttggagagagcttatggaaacaacttatgacatgtctataagttgtttttag-gttatttcca 33645995  T
Q  324 tatgctctc 332  Q
    || ||||||    
T  33645996 taagctctc 33646004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 302
Target Start/End: Complemental strand, 23214983 - 23214911
Alignment:
Q  230 ttatctactgacataaagacttatgagactgtttacaaaagtttatgaaaacaactaatgacatatctataag 302  Q
    |||||||||  |||||| ||||||||||||||||   | | ||||||||||||||| ||||||| || |||||    
T  23214983 ttatctactagcataaacacttatgagactgtttgagagaatttatgaaaacaacttatgacatttccataag 23214911  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 309
Target Start/End: Complemental strand, 10031861 - 10031781
Alignment:
Q  229 tttatctactgacataaagacttatgagactgtttacaaaagtttatgaaaacaactaatgacatatctataagttgtttt 309  Q
    |||||||||||||||||  |||| |||||||||||  || ||  ||||||| ||||| | |||||||| ||||||||||||    
T  10031861 tttatctactgacataagcacttgtgagactgtttgaaagagcctatgaaaccaacttacgacatatccataagttgtttt 10031781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 315
Target Start/End: Original strand, 20377904 - 20377947
Alignment:
Q  272 ttatgaaaacaactaatgacatatctataagttgtttttggctt 315  Q
    |||||||||||||| ||||||| ||||||||||||||| |||||    
T  20377904 ttatgaaaacaacttatgacatgtctataagttgttttcggctt 20377947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 219 - 302
Target Start/End: Complemental strand, 27857497 - 27857414
Alignment:
Q  219 tttatctgagtttatctactgacataaagacttatgagactgtttacaaaagtttatgaaaacaactaatgacatatctataag 302  Q
    ||||| |||||||||||||||||||| | |||| ||| |||||||   | || |||||||||||||| ||||||| || |||||    
T  27857497 tttatttgagtttatctactgacatagacacttgtgaaactgtttgggagagcttatgaaaacaacttatgacatctccataag 27857414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 264
Target Start/End: Original strand, 7351589 - 7351647
Alignment:
Q  206 ctgtttaacttgatttatctgagtttatctactgacataaagacttatgagactgttta 264  Q
    |||||||| |||| |||| |||||||||||||||||||||  |||| ||||| ||||||    
T  7351589 ctgtttaaattgacttatttgagtttatctactgacataagcacttgtgagattgttta 7351647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 310
Target Start/End: Complemental strand, 31839309 - 31839268
Alignment:
Q  269 agtttatgaaaacaactaatgacatatctataagttgttttt 310  Q
    ||||||||| ||||||| |||||||||||||||||| |||||    
T  31839309 agtttatgataacaacttatgacatatctataagtttttttt 31839268  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 309
Target Start/End: Complemental strand, 4868542 - 4868449
Alignment:
Q  215 ttgatttatctgagtttatctactgacataaagacttatgagactgtttacaaaagtttatgaaaacaactaatgacatatctataagttgtttt 309  Q
    ||||||||| ||| |||||||| |||||||   |||| |||||||||||   | |||||||| |||||||| ||||||| || ||||||||||||    
T  4868542 ttgatttatttgaatttatctattgacataggcacttgtgagactgtttgagagagtttatg-aaacaacttatgacatgtcaataagttgtttt 4868449  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 332
Target Start/End: Complemental strand, 26410411 - 26410306
Alignment:
Q  227 agtttatctactgacataaagacttatgagactgtttacaaaagtttatgaaaacaactaatgacatatctataagttgtttttggctttatttccatat 326  Q
    |||||||| ||||||||||  |||| |||||||| ||   | || ||||| ||||| || ||||||| || | ||| ||||||| ||||||||||||||     
T  26410411 agtttatcaactgacataagcacttctgagactgcttgggagagcttatggaaacagctcatgacatgtccagaagctgtttttagctttatttccataa 26410312  T
Q  327 gctctc 332  Q
    ||||||    
T  26410311 gctctc 26410306  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 309
Target Start/End: Original strand, 27119913 - 27119950
Alignment:
Q  272 ttatgaaaacaactaatgacatatctataagttgtttt 309  Q
    |||||||||| ||||||||||| |||||||||||||||    
T  27119913 ttatgaaaaccactaatgacatgtctataagttgtttt 27119950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 331
Target Start/End: Complemental strand, 6950465 - 6950350
Alignment:
Q  215 ttgatttatctgagtttatctactgacataaagacttatgagactgtttacaaaagtttatgaaaacaactaatgacatatctataagttgtttttggct 314  Q
    |||| |||| ||||||||||||||| |||||| | || ||||| |||||   | || ||||| |||||||  ||||||| || ||||||||||||  ||     
T  6950465 ttgacttatttgagtttatctactggcataaacatttgtgagattgtttgggagagcttatgtaaacaacctatgacatgtcgataagttgttttcagc- 6950367  T
Q  315 ttatttccatatgctct 331  Q
    ||||||||||| |||||    
T  6950366 ttatttccataagctct 6950350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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