View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9078_low_2 (Length: 568)
Name: NF9078_low_2
Description: NF9078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9078_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 465; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 20 - 547
Target Start/End: Original strand, 5389866 - 5390395
Alignment:
| Q |
20 |
ctgacgttgtcctccaggctaccatcagcactgt----cctcctcaacctaataaggatctccaatccaccacagctaaaagtggtaatcctaatattga |
115 |
Q |
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| T |
5389866 |
ctgacgttgtcctccaggctaccatcagcactgtctgtcctcctcaacctaataaggatctccaatccaccacagctaaaagtggtaatcctaatattga |
5389965 |
T |
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| Q |
116 |
aagccttccgtgatgagagattgtggccgtggtttacgtgttattgatatctgtaatctatctatctatatgtatcagtttgttgtgagtgtgaaggtgt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
5389966 |
aagccttccgtgatgagagattgtggccgtggtttatgtgttattgatatctgtaatctatctatctatatgtatcagtttgttgtgagtgtgaaagtgt |
5390065 |
T |
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| Q |
216 |
tatggtatcaaaattatatatttaaataacctttatcaggctttactggttatgtccagtgatgaaaatatatattatttgtttgc--tatatgtatttt |
313 |
Q |
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| T |
5390066 |
tatggtatcaaaattatatatttaaataacctttatcaggctttactggttatgtccagtgatgaaaatgtatattatttgtttgctatatatgtatttt |
5390165 |
T |
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| Q |
314 |
gtattgccccatgttatatggttatacagattgaaataaaattcacatgtgttttttgtgtctcagactatcacaatacgtagcatcttttatttttctt |
413 |
Q |
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| T |
5390166 |
gtattgtcccatgttataaggttatacagattgaaataaaattcacatgtgttttttgtgtctcagactatcacaatacgtagcatcttttatttttctt |
5390265 |
T |
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| Q |
414 |
ttcttgaagcatataatgtaactcagaaattactaatatgtcatttgtagtttgatttgtatatttcttccaaagttgtttgtctagcatataatgtaca |
513 |
Q |
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| T |
5390266 |
ttcttgaagcatataatgtacctcagaaattactaatatgtcatttgtagtttgatttgtatatttcttccaaagttgtttgtctagcatataatgtaca |
5390365 |
T |
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| Q |
514 |
aatttcattcaatagttcttaagctttttactgg |
547 |
Q |
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| T |
5390366 |
aat----ttcaatagttcttaagctttttactgg |
5390395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 283 - 454
Target Start/End: Original strand, 5393870 - 5394054
Alignment:
| Q |
283 |
atatatattatttgtttgctatatgtattttgtatt---gccccatgttatatggttatacag----------attgaaataaaattcacatgtgttttt |
369 |
Q |
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| T |
5393870 |
atatatattatttgtgtgctatatgtattttgtattattgtcccatgttatatgcttatacaggtgtatgcagattgaaataaaattcacatgtgtttct |
5393969 |
T |
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| Q |
370 |
tgtgtctcagactatcacaatacgtagcatcttttatttttcttttcttgaagcatataatgtaactcagaaattactaatatgt |
454 |
Q |
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| T |
5393970 |
tgtgtctgagtccatcacaatacgtagcatcttttatttttctattcttgaaccatataatgtaacttagaaattattaatatgt |
5394054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 61 - 251
Target Start/End: Original strand, 5393630 - 5393815
Alignment:
| Q |
61 |
aacctaataaggatctccaatccaccacagctaaaagtggtaatcctaatattgaaagccttccgtgatgagagattgtggccgtggtttacgtgttatt |
160 |
Q |
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|||||||||||||||| || || | |||| |||||||||||||| |||| ||||| |||||||||||||||||| |||||| | ||||||| ||||||| |
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| T |
5393630 |
aacctaataaggatcttcattctatcacatctaaaagtggtaattctaaaattgacagccttccgtgatgagaggttgtggtcatggtttatgtgttat- |
5393728 |
T |
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| Q |
161 |
gatatctgtaatctatctatctatatgtatcagtttgttgt--gagtgtgaaggtgttatggtatcaaaattatatatttaaataacctttat |
251 |
Q |
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| T |
5393729 |
------tgttatctatctatctatatgtatcagtttgttgtacgagtgtgaaagtactatggtatcaaaattatatgtttaaataacctttat |
5393815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 72 - 160
Target Start/End: Original strand, 5398804 - 5398892
Alignment:
| Q |
72 |
gatctccaatccaccacagctaaaagtggtaatcctaatattgaaagccttccgtgatgagagattgtggccgtggtttacgtgttatt |
160 |
Q |
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| T |
5398804 |
gatctccaatccactgcagctaaaaatggtaatcctacaattgaaatccttccatgatgagagattgtggccatggtttgtgtgttatt |
5398892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 394
Target Start/End: Original strand, 5399100 - 5399156
Alignment:
| Q |
340 |
cagattgaaataaaattcaca--tgtgttttttgtgtctcagactatcacaatacgt |
394 |
Q |
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| T |
5399100 |
cagattgaaataaaattcacatgtgtgtttcttgtgtctcggagcatcacaatacgt |
5399156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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