View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9078_low_21 (Length: 292)
Name: NF9078_low_21
Description: NF9078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9078_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 131; Significance: 5e-68; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 136 - 274
Target Start/End: Complemental strand, 47231147 - 47231009
Alignment:
| Q |
136 |
aactcatacacgattacacgctcgaattacacaatcaaacaaaaattgacattttttatgtaatgaaagctgcacaaattttctcttaaatagttgtaat |
235 |
Q |
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| T |
47231147 |
aactcatacacgattacacgctcgaattacacaatcaaacaaaaattgacattttttatgtaatgaaagctgcacaaattttctcttaaatagttgtaat |
47231048 |
T |
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| Q |
236 |
tgtaactttattatgtttttcactatttatttttgttaa |
274 |
Q |
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| T |
47231047 |
tttaactttattatgttttccactatttatttttgttaa |
47231009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 47231192 - 47231142
Alignment:
| Q |
1 |
ataaaaagagacgccacatctccatccaaaacaatcgcactttgaaactca |
51 |
Q |
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| T |
47231192 |
ataaaaagagacgtcacatctccatccaaaacaatcgcactttaaaactca |
47231142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 101; Significance: 4e-50; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 150 - 274
Target Start/End: Complemental strand, 5730855 - 5730731
Alignment:
| Q |
150 |
tacacgctcgaattacacaatcaaacaaaaattgacattttttatgtaatgaaagctgcacaaattttctcttaaatagttgtaattgtaactttattat |
249 |
Q |
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| T |
5730855 |
tacacgctcgaattacacaataaaacaaaatttgacattttttctgcaatgaaagctgcacaaattttctcttgaatagttgtaattttaactttattat |
5730756 |
T |
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| Q |
250 |
gtttttcactatttatttttgttaa |
274 |
Q |
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| T |
5730755 |
gtttttcactatttatttttgttaa |
5730731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 150 - 274
Target Start/End: Complemental strand, 5801373 - 5801249
Alignment:
| Q |
150 |
tacacgctcgaattacacaatcaaacaaaaattgacattttttatgtaatgaaagctgcacaaattttctcttaaatagttgtaattgtaactttattat |
249 |
Q |
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||||||||||||||||||||| |||||||| |||||||||||| || |||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
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| T |
5801373 |
tacacgctcgaattacacaataaaacaaaatttgacattttttctgcaatgaaagctgcacaaattttctcttgaatagttgtaattttaactttattat |
5801274 |
T |
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| Q |
250 |
gtttttcactatttatttttgttaa |
274 |
Q |
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| T |
5801273 |
gtttttcactatttatttttgttaa |
5801249 |
T |
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