View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9078_low_23 (Length: 287)
Name: NF9078_low_23
Description: NF9078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9078_low_23 |
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| [»] scaffold0554 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 10 - 274
Target Start/End: Complemental strand, 23033790 - 23033526
Alignment:
| Q |
10 |
gcagagaccaagaaaaatttatatcggtggtaaaacaaacactaaagattgcaggaggttttaacttgggagatttgtttccttcttctaaatggcttca |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23033790 |
gcagagaccaagaaaaatttatatcggtggtaaaacaaacactaaagattgcaggaggttttaacttgggagatttgtttccttcttctaaatggcttca |
23033691 |
T |
|
| Q |
110 |
atatgttactggtattaggcctaagcttgagaagtttcatcgacagaatgatgagatgtttgaaaacatcatcgatgagcataaaaatgcaaagtacaca |
209 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
23033690 |
acatgttactggtattaggcctaagcttgagaagtttcatcgacaaaatgatgagatgtttgaaaacatcatcgatgagcataaaaaggcaaagtacaca |
23033591 |
T |
|
| Q |
210 |
aacgcccaaggtaaggcagtagaagatctggtagacattctcttaaaatatgaggatggtagtga |
274 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23033590 |
aacgcccaaggtaaggtagtagaagatctggtagacattctcttaaaatatgaggatggtagtga |
23033526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 14 - 274
Target Start/End: Complemental strand, 23018189 - 23017920
Alignment:
| Q |
14 |
agaccaagaaaaatttatatcggtggtaaaacaaacactaaagattgcaggaggttttaacttgggagatttgtttccttcttctaaatggcttcaatat |
113 |
Q |
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||||||||||||||||||||| ||||||||| || | |||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||| |
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| T |
23018189 |
agaccaagaaaaatttatatcagtggtaaaagaatctgtaaagattgcagcaggttttgacttgggagattcgtttccttcttctaaatggcttcaatat |
23018090 |
T |
|
| Q |
114 |
gttactggtattaggcctaagcttgagaagtttcatcgacagaatgatgagatgtttgaaaacatcatcgatgagcataaaaatgcaaagtacacaaacg |
213 |
Q |
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||||| ||| | ||||||||| ||||||| ||||||| ||| | |||||||| || || |||||||| ||||| ||||||| | |||||||||||| | |
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| T |
23018089 |
gttaccggtttgaggcctaagattgagaaatttcatcaacaaaccgatgagatattagagaacatcattgatgaacataaaagggaaaagtacacaaaag |
23017990 |
T |
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| Q |
214 |
cc---------caaggtaaggcagtagaagatctggtagacattctcttaaaatatgaggatggtagtga |
274 |
Q |
| |
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| |||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23017989 |
tcaaaggtgatcaaggtgaggtagcagaagatctggtagacattctcttaaaatatgaggatggtagtga |
23017920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 14 - 271
Target Start/End: Complemental strand, 23146855 - 23146589
Alignment:
| Q |
14 |
agaccaagaaaaatttatatcggtggtaaaacaaacactaaagattgcaggaggttttaacttgggagatttgtttccttcttctaaatggcttcaatat |
113 |
Q |
| |
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||||||||| ||||||||||| |||||||||||| || ||||| ||||||| |||||| ||||||||||||||||||| || |||||||| | || | |
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| T |
23146855 |
agaccaagataaatttatatcagtggtaaaacaatcaataaaggttgcagggggttttgacttgggagatttgtttccctcagctaaatggttacagctt |
23146756 |
T |
|
| Q |
114 |
gttactggtattaggcctaagcttgagaagtttcatcgacagaatgatgagatgtttgaaaacatcatcgatgagcataaaaatgcaaagtacacaaacg |
213 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||||||| | |||| |||| ||||||||||||||| ||||||||||| | | |||||||||||| | |
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| T |
23146755 |
gttactggtatgaggcctaagcttgagaggtttcatcgacaaactgatcagatatttgaaaacatcatcaatgagcataaagaggaaaagtacacaaaag |
23146656 |
T |
|
| Q |
214 |
cc---------caaggtaaggcagtagaagatctggtagacattctcttaaaatatgaggatggtag |
271 |
Q |
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|| |||||||| | || |||||||||| ||||| ||||||||||||||||||| ||||| |
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| T |
23146655 |
ccaaagatgatcaaggtaaagtagaagaagatctgatagacgttctcttaaaatatgaggacggtag |
23146589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 15 - 271
Target Start/End: Complemental strand, 23039979 - 23039714
Alignment:
| Q |
15 |
gaccaagaaaaatttatatcggtggtaaaacaaacactaaagattgcaggaggttttaacttgggagatttgtttccttcttctaaatggcttcaatatg |
114 |
Q |
| |
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|||||||| ||||||||||| |||||||||||| || ||||| |||| || |||||| ||||||||||||||||||| || |||||||| | || || |
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| T |
23039979 |
gaccaagacaaatttatatcagtggtaaaacaatcaataaaggttgccgggggttttgacttgggagatttgtttccctcagctaaatggttacagcttg |
23039880 |
T |
|
| Q |
115 |
ttactggtattaggcctaagcttgagaagtttcatcgacagaatgatgagatgtttgaaaacatcatcgatgagcataaaaatgcaaagtacacaaacgc |
214 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||||||| | |||| |||| || |||||||||||| ||||||||||| | | |||||||||||| || |
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| T |
23039879 |
ttactggtatgaggcctaagcttgagaggtttcatcgacaaactgatcagatattagaaaacatcatcaatgagcataaagaggaaaagtacacaaaagc |
23039780 |
T |
|
| Q |
215 |
c---------caaggtaaggcagtagaagatctggtagacattctcttaaaatatgaggatggtag |
271 |
Q |
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| |||||||| | || ||||||||| |||||| ||||||||||||||||||| ||||| |
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| T |
23039779 |
caaagatgatcaaggtaaagtagaagaagatctcgtagacgttctcttaaaatatgaggacggtag |
23039714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 14 - 211
Target Start/End: Complemental strand, 23037103 - 23036906
Alignment:
| Q |
14 |
agaccaagaaaaatttatatcggtggtaaaacaaacactaaagattgcaggaggttttaacttgggagatttgtttccttcttctaaatggcttcaatat |
113 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||| ||||| ||||||| |||||||||||||||||||||||||| || |||||||||| || | |
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| T |
23037103 |
agaccaagaaaaatttatatcattggtaagacaaaccataaaggttgcagggggttttaacttgggagatttgtttccctcagctaaatggctacagcgt |
23037004 |
T |
|
| Q |
114 |
gttactggtattaggcctaagcttgagaagtttcatcgacagaatgatgagatgtttgaaaacatcatcgatgagcataaaaatgcaaagtacacaaa |
211 |
Q |
| |
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|||||||| | ||||||||||| |||| | |||||||||| | |||| |||| || |||||||||||| ||||||||||| | | |||||||||||| |
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| T |
23037003 |
attactggtttgaggcctaagctggagaggattcatcgacaaactgatcagatattagaaaacatcatcaatgagcataaagaggaaaagtacacaaa |
23036906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 110
Target Start/End: Original strand, 22914506 - 22914558
Alignment:
| Q |
58 |
ttgcaggaggttttaacttgggagatttgtttccttcttctaaatggcttcaa |
110 |
Q |
| |
|
|||| ||||||||||| ||||||||||||| ||||||| ||||||||||||| |
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|
| T |
22914506 |
ttgctggaggttttaatttgggagatttgtacccttcttataaatggcttcaa |
22914558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 63 - 110
Target Start/End: Complemental strand, 22933580 - 22933533
Alignment:
| Q |
63 |
ggaggttttaacttgggagatttgtttccttcttctaaatggcttcaa |
110 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||| ||||||||||||| |
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| T |
22933580 |
ggaggttttaatttgggagatttgtacccttcttataaatggcttcaa |
22933533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0554 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: scaffold0554
Description:
Target: scaffold0554; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 14 - 194
Target Start/End: Original strand, 5583 - 5763
Alignment:
| Q |
14 |
agaccaagaaaaatttatatcggtggtaaaacaaacactaaagattgcaggaggttttaacttgggagatttgtttccttcttctaaatggcttcaatat |
113 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||| ||| |||||||||| ||| | |
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| T |
5583 |
agaccaagaaaaatttatatcagtggtaaaacaaacaataaggattgcaggaggttttgacttgggagatttgtttccatctgctaaatggctacaacaa |
5682 |
T |
|
| Q |
114 |
gttactggtattaggcctaagcttgagaagtttcatcgacagaatgatgagatgtttgaaaacatcatcgatgagcataaa |
194 |
Q |
| |
|
||||||||| | |||||||||||||||| | |||||||||| | |||| | || |||||||||||||| ||||||||||| |
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|
| T |
5683 |
gttactggtttgaggcctaagcttgagatgcttcatcgacaaactgatcaaatacttgaaaacatcatcaatgagcataaa |
5763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 14 - 211
Target Start/End: Complemental strand, 21780870 - 21780673
Alignment:
| Q |
14 |
agaccaagaaaaatttatatcggtggtaaaacaaacactaaagattgcaggaggttttaacttgggagatttgtttccttcttctaaatggcttcaatat |
113 |
Q |
| |
|
||||||||||||||||||||| || |||||||| | |||| || ||| ||||||||| ||||||||||||||||||||| |||||||| || || || |
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|
| T |
21780870 |
agaccaagaaaaatttatatcagttataaaacaatcgataaaagtttcagcaggttttaatttgggagatttgtttccttctactaaatggattgaacat |
21780771 |
T |
|
| Q |
114 |
gttactggtattaggcctaagcttgagaagtttcatcgacagaatgatgagatgtttgaaaacatcatcgatgagcataaaaatgcaaagtacacaaa |
211 |
Q |
| |
|
|||||||| | |||||||||||||||| ||||| ||||| | |||| |||| ||||||||||||||| | || |||||| | |||||| ||||||| |
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|
| T |
21780770 |
gttactggattgaggcctaagcttgagagttttcaacgacaaactgatcagatatttgaaaacatcatcaaggaccataaagaggcaaagcacacaaa |
21780673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 230 - 271
Target Start/End: Complemental strand, 21780645 - 21780604
Alignment:
| Q |
230 |
agaagatctggtagacattctcttaaaatatgaggatggtag |
271 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||||||||||| |
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| T |
21780645 |
agaagatctcgtagacgttctcttaaaatatgaggatggtag |
21780604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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