View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9078_low_27 (Length: 244)
Name: NF9078_low_27
Description: NF9078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9078_low_27 |
 | |
|
| [»] chr4 (6 HSPs) |
| |
|
| [»] scaffold0552 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 11 - 244
Target Start/End: Original strand, 6730050 - 6730279
Alignment:
| Q |
11 |
acctgtgggcattggaccggccttaactcagattttggatgctctcagagagctcaaggttgattttgtccgactagagcagactgttacttctaggttg |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6730050 |
acctgtgggcattggaccggccttaactcagattttggatgctctcagagagctcaaagttgattttgtccgactagagcagactgttacttctaggttg |
6730149 |
T |
|
| Q |
111 |
aatgcagtagaggtcagattagaggtacttgaggatggcattacccaaataccgcgtgggtcgagttctgactaaggtatcagtcagtattgtacaccca |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
6730150 |
aatgcagtagaggtcagattagaggtacttgaggatgtcattacccaaataccgcgtgggtcgagttctgactaaggta----tcagtattgtacaccca |
6730245 |
T |
|
| Q |
211 |
aagtcctgttagttgtaattgaacctaagatacc |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
6730246 |
aagtcctgttagttgtaattgaacctaagatacc |
6730279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 37 - 177
Target Start/End: Complemental strand, 6586696 - 6586556
Alignment:
| Q |
37 |
ctcagattttggatgctctcagagagctcaaggttgattttgtccgactagagcagactgttacttctaggttgaatgcagtagaggtcagattagaggt |
136 |
Q |
| |
|
||||||||||||||||| |||||||||||| || |||||| || ||| ||||| |||||||||| ||||||||||||||||||| || ||||| ||| |
|
|
| T |
6586696 |
ctcagattttggatgctatcagagagctcagggctgatttcatcagacaagagctgactgttactgctaggttgaatgcagtagatgtgagattggagag |
6586597 |
T |
|
| Q |
137 |
acttgaggatggcattacccaaataccgcgtgggtcgagtt |
177 |
Q |
| |
|
||||||||||||||| |||| |||| || ||||||||||| |
|
|
| T |
6586596 |
gcttgaggatggcattgcccacatactgcatgggtcgagtt |
6586556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 35 - 147
Target Start/End: Original strand, 6817119 - 6817231
Alignment:
| Q |
35 |
aactcagattttggatgctctcagagagctcaaggttgattttgtccgactagagcagactgttacttctaggttgaatgcagtagaggtcagattagag |
134 |
Q |
| |
|
|||||||||||||||||| |||| |||| ||| || |||||| || ||||||||||||||||||||| ||||||| |||||||||||||||| ||||||| |
|
|
| T |
6817119 |
aactcagattttggatgccctcaaagagttcagggctgatttcgttcgactagagcagactgttactgctaggttaaatgcagtagaggtcaaattagag |
6817218 |
T |
|
| Q |
135 |
gtacttgaggatg |
147 |
Q |
| |
|
|||||||||| |
|
|
| T |
6817219 |
aagcttgaggatg |
6817231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 37 - 168
Target Start/End: Original strand, 6839235 - 6839366
Alignment:
| Q |
37 |
ctcagattttggatgctctcagagagctcaaggttgattttgtccgactagagcagactgttacttctaggttgaatgcagtagaggtcagattagaggt |
136 |
Q |
| |
|
|||||||||||||||| |||||||||||| || |||||||||| ||| |||||||||||||| ||||||| |||||||||||||| |||||||||| |
|
|
| T |
6839235 |
ctcagattttggatgcaatcagagagctcagggctgattttgtcagacacgagcagactgttacagctaggttcaatgcagtagaggtgagattagagga |
6839334 |
T |
|
| Q |
137 |
acttgaggatggcattacccaaataccgcgtg |
168 |
Q |
| |
|
|||| |||| | ||||||| |||| ||||| |
|
|
| T |
6839335 |
gcttgctgatgtcgttacccagatacagcgtg |
6839366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 37 - 179
Target Start/End: Original strand, 6798306 - 6798436
Alignment:
| Q |
37 |
ctcagattttggatgctctcagagagctcaaggttgattttgtccgactagagcagactgttacttctaggttgaatgcagtagaggtcagattagaggt |
136 |
Q |
| |
|
|||||||||||||||| |||| |||||||| || |||||| ||||||||||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
6798306 |
ctcagattttggatgccctcaaagagctcagggatgatttcgtccgactagagcagactgttac------------tgcagtagaggtcaaattagagga |
6798393 |
T |
|
| Q |
137 |
acttgaggatggcattacccaaataccgcgtgggtcgagttct |
179 |
Q |
| |
|
|| ||||||| |||| ||||||||| |||| | ||||||||| |
|
|
| T |
6798394 |
gctcgaggatgccattgcccaaatactgcgtcgatcgagttct |
6798436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 37 - 168
Target Start/End: Original strand, 6755047 - 6755178
Alignment:
| Q |
37 |
ctcagattttggatgctctcagagagctcaaggttgattttgtccgactagagcagactgttacttctaggttgaatgcagtagaggtcagattagaggt |
136 |
Q |
| |
|
|||| ||| ||||||| |||||| ||||| || |||||| ||| ||| |||||||||||||||| ||||||||||||||||||||| ||||| |||| |
|
|
| T |
6755047 |
ctcaaattctggatgccatcagagcgctcagggctgatttcgtcagacaagagcagactgttactagtaggttgaatgcagtagaggtgagattggagga |
6755146 |
T |
|
| Q |
137 |
acttgaggatggcattacccaaataccgcgtg |
168 |
Q |
| |
|
|||| |||| ||| |||| |||||||||| |
|
|
| T |
6755147 |
gcttgctgatgtcatagcccagataccgcgtg |
6755178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0552 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0552
Description:
Target: scaffold0552; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 35 - 147
Target Start/End: Complemental strand, 6714 - 6602
Alignment:
| Q |
35 |
aactcagattttggatgctctcagagagctcaaggttgattttgtccgactagagcagactgttacttctaggttgaatgcagtagaggtcagattagag |
134 |
Q |
| |
|
|||||||||||||||||| |||| |||| ||| || |||||| || ||||||||||||||||||||| ||||||| |||||||||||||||| ||||||| |
|
|
| T |
6714 |
aactcagattttggatgccctcaaagagttcagggctgatttcgttcgactagagcagactgttactgctaggttaaatgcagtagaggtcaaattagag |
6615 |
T |
|
| Q |
135 |
gtacttgaggatg |
147 |
Q |
| |
|
|||||||||| |
|
|
| T |
6614 |
aagcttgaggatg |
6602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University