View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9078_low_29 (Length: 243)
Name: NF9078_low_29
Description: NF9078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9078_low_29 |
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Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 228
Target Start/End: Original strand, 35320887 - 35321097
Alignment:
| Q |
18 |
agaggtggacgggggcgggttttgagggcgatgagcgtaagggttttgcggtggaggaacaacaccgggagggttttgtggcggaggagcgaaggcatat |
117 |
Q |
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| T |
35320887 |
agaggtggaagggggcgggttttgagggcgatgagcgtaagggttttgcggtggaggaacaacaccgggagggttttgtggcggaggagcgaaggcatat |
35320986 |
T |
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| Q |
118 |
gggttgtgctgcggaggagggaaggaatgaggccagggagagttagggagatggaagttgtgggaagggctgtaatagttggggtagaaggcgttagggt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35320987 |
gggttgtgctgcggaggagggaaggaatgaggccagggagagttagggagatggaagttgtgggaagggctgtaatagttggggtagaaggcgttagggt |
35321086 |
T |
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| Q |
218 |
ttggaggaggt |
228 |
Q |
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| T |
35321087 |
ttggaggaggt |
35321097 |
T |
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