View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9078_low_3 (Length: 549)
Name: NF9078_low_3
Description: NF9078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9078_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-135; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 11 - 255
Target Start/End: Original strand, 2324581 - 2324825
Alignment:
| Q |
11 |
tttggtgttctagagcctaagaatgttccttctgaaacccaaactgggagctcctcacaagctgatttgagtgttttaaaggatcctacatacaatgatc |
110 |
Q |
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| T |
2324581 |
tttggtgttctagagcctaagaatgttccttctgaaacccaaactgggagctcctcacaagctgatttgagtgttttaaaggatcctacatacaatgatc |
2324680 |
T |
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| Q |
111 |
ctgaagatgctattgtttcatctgatcttcaactgggattaccagaagatgatgatgtttcaactaaacttcagttgggattcacagccaagagaaagag |
210 |
Q |
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| T |
2324681 |
ctgaagatgctattgtttcatctgatcttcaactgggattaccagaagatgatgatgtttcaactaaacttcagttgggattcacagccaagagaaagag |
2324780 |
T |
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| Q |
211 |
agacactaatgatccagaagagtagtgtttaatctcaaccctgaa |
255 |
Q |
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| T |
2324781 |
agacactaatgatccagaagagtagtgtttaatctcaaccctgaa |
2324825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 315 - 534
Target Start/End: Original strand, 2324885 - 2325104
Alignment:
| Q |
315 |
aaattgataacttttgaaaagaattcttgtagtgagtgcatgagatcaccatcttttcattggtgtaaactagtttatttctttggatatattttttatc |
414 |
Q |
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| T |
2324885 |
aaattgataacttttgaaaagaattcttgcagtgagtgcatgagatcaccatcttttcattggtgtaaactagtttatttctttggatatattttttatc |
2324984 |
T |
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| Q |
415 |
acgtctgtgtcactaagcttggtagtgttaaaatgttcacttcaatttgcgaatgtacggtaacactagattgatgctctcatattttatagctagaaca |
514 |
Q |
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| T |
2324985 |
acgtctgtgtcactaagctcggtagtgttaaaatgttcacttcaatttgcgaatgtacggtaatactagattgatgctctcatattttatagctagaaca |
2325084 |
T |
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| Q |
515 |
cattataacctacaatgtag |
534 |
Q |
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| T |
2325085 |
cattataacctacaatgtag |
2325104 |
T |
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