View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9078_low_5 (Length: 441)
Name: NF9078_low_5
Description: NF9078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9078_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 89 - 424
Target Start/End: Complemental strand, 409833 - 409498
Alignment:
| Q |
89 |
aagataaatcatgaacatgtaccatacctgctttaagggaagcatcagcttgagaaacgttacgagccatagcagcaagaagagcaatcccatgttcagc |
188 |
Q |
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| T |
409833 |
aagataaatcatgtaaatgtaccataccagctttaagggaagcatcagcttgagaaacgttacgagccatagcagcaagaagagcaatcccatgttcagc |
409734 |
T |
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| Q |
189 |
agcagcaatagtattagctgtaggagcattcacaacaagacaaccaaattcagtagcagcttgtagatccacattatcaatcccaacaccagctctacca |
288 |
Q |
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| T |
409733 |
agcagcaatagtattagcagtaggagcattcacaacaagacaaccaaattcagtagcagcttgtagatccacattatcaatcccaacaccagctctacca |
409634 |
T |
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| Q |
289 |
acaactttcaactttccttttcctgcttcaaacacttgccttgtaactttcgtaccgcttctcacaatcaaagcatcacagcttgagatcttcttgcata |
388 |
Q |
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| T |
409633 |
acaactttcaactttcctttccctgcttcaaacactttccttgtaactttcgtaccgcttctcacaatcaaagcatcacagcttgagatcttcttgcata |
409534 |
T |
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| Q |
389 |
ggtcttctggtgaaagatcataagcacattccacat |
424 |
Q |
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| T |
409533 |
ggtcttctggtgaaagatcatatgcacattccacat |
409498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 175 - 293
Target Start/End: Complemental strand, 48784796 - 48784678
Alignment:
| Q |
175 |
atcccatgttcagcagcagcaatagtattagctgtaggagcattcacaacaagacaaccaaattcagtagcagcttgtagatccacattatcaatcccaa |
274 |
Q |
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| T |
48784796 |
atcccgtgttcagcggcggcaacagtgttagcagtgggagcattaacaaccaagcaaccatgttcagtagcggcggccagatccacgttatcaataccaa |
48784697 |
T |
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| Q |
275 |
caccagctctaccaacaac |
293 |
Q |
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| T |
48784696 |
caccagctctaccaacaac |
48784678 |
T |
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