View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9078_low_8 (Length: 353)

Name: NF9078_low_8
Description: NF9078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9078_low_8
NF9078_low_8
[»] chr7 (8 HSPs)
chr7 (1-342)||(3649199-3649532)
chr7 (14-125)||(3657323-3657434)
chr7 (293-342)||(3641214-3641263)
chr7 (294-342)||(3657601-3657649)
chr7 (283-342)||(3647024-3647083)
chr7 (1-124)||(3653307-3653430)
chr7 (1-59)||(3659573-3659631)
chr7 (164-212)||(3657482-3657530)
[»] chr1 (11 HSPs)
chr1 (288-342)||(45316458-45316512)
chr1 (285-342)||(42217279-42217336)
chr1 (294-342)||(42409606-42409654)
chr1 (288-342)||(2176363-2176417)
chr1 (288-342)||(10542395-10542449)
chr1 (288-342)||(42202436-42202490)
chr1 (288-342)||(42211304-42211358)
chr1 (288-342)||(45151996-45152050)
chr1 (294-342)||(42417650-42417698)
chr1 (283-342)||(43014373-43014432)
chr1 (293-342)||(51795025-51795074)
[»] chr8 (5 HSPs)
chr8 (285-342)||(31558261-31558318)
chr8 (283-342)||(31555176-31555235)
chr8 (283-342)||(31878234-31878293)
chr8 (293-339)||(13568429-13568475)
chr8 (1-36)||(36164594-36164629)
[»] chr3 (2 HSPs)
chr3 (285-342)||(46446214-46446271)
chr3 (283-342)||(21884103-21884162)
[»] chr5 (13 HSPs)
chr5 (282-342)||(10109298-10109358)
chr5 (288-342)||(10105891-10105945)
chr5 (288-342)||(10212331-10212385)
chr5 (294-342)||(10102813-10102861)
chr5 (285-337)||(12104608-12104660)
chr5 (283-342)||(10209780-10209839)
chr5 (296-342)||(13856027-13856073)
chr5 (293-342)||(9674769-9674818)
chr5 (297-342)||(12109397-12109442)
chr5 (286-342)||(9660286-9660342)
chr5 (288-340)||(37278735-37278787)
chr5 (313-342)||(3467669-3467698)
chr5 (294-342)||(10215930-10215978)
[»] chr4 (6 HSPs)
chr4 (288-342)||(17889425-17889479)
chr4 (289-342)||(46362546-46362599)
chr4 (309-342)||(36790859-36790892)
chr4 (309-342)||(49588201-49588234)
chr4 (294-342)||(25698817-25698865)
chr4 (300-339)||(20918686-20918725)
[»] chr6 (1 HSPs)
chr6 (305-342)||(33891612-33891649)
[»] chr2 (4 HSPs)
chr2 (294-342)||(26568347-26568395)
chr2 (309-342)||(5900549-5900582)
chr2 (312-342)||(43633450-43633480)
chr2 (309-345)||(2341333-2341369)


Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-148; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 3649199 - 3649532
Alignment:
Q  1 ttcaaatcagttctgctttccatcttaagtggcaatagaactgagagcagaagcttctcatgatgtacctgaaactgatctttcactcaatctccataac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3649199 ttcaaatcagttctgctttccatcttaagtggcaatagaactgagagcagaagcttctcatgatgtacctgaaactgatctttcactcaatctccataac 3649298  T
Q  101 cactactacgcattgatcctccaccagcacttcttcgagagtaaattgaaatagttctacaaaaagtgatttgatgtctaattgtctatgttcagactta 200  Q
    ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  3649299 cactactacgcgttgatcctccaccagcacttcttcgagagtagattgaaatagttctacataaagtgatttgatgtctaattgtctatgttctgactta 3649398  T
Q  201 agtcccacatcgactagagcataagtgaaactaatctgctcatatataaaaggaaaacatctctccaatttaccaatttatgatcatggagtcgtgtgat 300  Q
    |||||||||| | |||| |||||||||||||||| |||||||||||||||||||||||||||||         |||||||| |||| ||||| |||||||    
T  3649399 agtcccacattggctagcgcataagtgaaactaagctgctcatatataaaaggaaaacatctct--------tcaatttataatcacggagttgtgtgat 3649490  T
Q  301 gatgacatagcgaactattctttcgccttttactaaagaata 342  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  3649491 gatgacatagcgaactattctttcgccttttactaaagaata 3649532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 14 - 125
Target Start/End: Original strand, 3657323 - 3657434
Alignment:
Q  14 tgctttccatcttaagtggcaatagaactgagagcagaagcttctcatgatgtacctgaaactgatctttcactcaatctccataaccactactacgcat 113  Q
    |||| ||||| ||||| ||||||  | |||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||| |    
T  3657323 tgctctccattttaagcggcaatgcagctgagaacagaagcttctcatgatgtacctgaaactgctctttcagtcaatctccataaccactgctacgcgt 3657422  T
Q  114 tgatcctccacc 125  Q
    ||||||| ||||    
T  3657423 tgatccttcacc 3657434  T

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Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 293 - 342
Target Start/End: Original strand, 3641214 - 3641263
Alignment:
Q  293 cgtgtgatgatgacatagcgaactattctttcgccttttactaaagaata 342  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3641214 cgtgtgatgatgacatagcgaactattctttcgccttttactaaagaata 3641263  T

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Target: chr7; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 294 - 342
Target Start/End: Original strand, 3657601 - 3657649
Alignment:
Q  294 gtgtgatgatgacatagcgaactattctttcgccttttactaaagaata 342  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  3657601 gtgtgatgatgacatagcgaactattctttcgccttttactaaagaata 3657649  T

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Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 283 - 342
Target Start/End: Original strand, 3647024 - 3647083
Alignment:
Q  283 atcatggagtcgtgtgatgatgacatagcgaactattctttcgccttttactaaagaata 342  Q
    |||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  3647024 atcacggagccgtgtgatgatgacatagcaaactattctttcgccttttactaaagaata 3647083  T

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Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 3653307 - 3653430
Alignment:
Q  1 ttcaaatcagttctgctttccatcttaagtggcaatagaactgagagcagaagcttctcatgatgtacctgaaactgatctttcactcaatctccataac 100  Q
    ||||||||||||||||||||||| ||||| |||| | || | |||| ||||| |||||| || ||| | |||||||  |||||||||  |||||| | |     
T  3653307 ttcaaatcagttctgctttccattttaagcggcagtggagcagagaacagaatcttctcttggtgtgcttgaaactactctttcactatatctccgtcat 3653406  T
Q  101 cactactacgcattgatcctccac 124  Q
    | ||||||||  ||||||||||||    
T  3653407 cgctactacgtgttgatcctccac 3653430  T

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Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 3659573 - 3659631
Alignment:
Q  1 ttcaaatcagttctgctttccatcttaagtggcaatagaactgagagcagaagcttctc 59  Q
    ||||||||||||||||||||||| |||||||||||| || | |||| ||||| ||||||    
T  3659573 ttcaaatcagttctgctttccattttaagtggcaatggagcagagaacagaatcttctc 3659631  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 212
Target Start/End: Original strand, 3657482 - 3657530
Alignment:
Q  164 aagtgatttgatgtctaattgtctatgttcagacttaagtcccacatcg 212  Q
    |||||||| | ||||||| ||||||||||| |||| |||||||||||||    
T  3657482 aagtgattgggtgtctaactgtctatgttctgactaaagtcccacatcg 3657530  T

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Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 288 - 342
Target Start/End: Complemental strand, 45316512 - 45316458
Alignment:
Q  288 ggagtcgtgtgatgatgacatagcgaactattctttcgccttttactaaagaata 342  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45316512 ggagccgtgtgatgatgacatagcgaactattctttcgccttttactaaagaata 45316458  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 285 - 342
Target Start/End: Complemental strand, 42217336 - 42217279
Alignment:
Q  285 catggagtcgtgtgatgatgacatagcgaactattctttcgccttttactaaagaata 342  Q
    ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  42217336 catggagccgtgtgatgacgacatagcgaactattctttcgccttttactaaagaata 42217279  T

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Target: chr1; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 294 - 342
Target Start/End: Original strand, 42409606 - 42409654
Alignment:
Q  294 gtgtgatgatgacatagcgaactattctttcgccttttactaaagaata 342  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  42409606 gtgtgatgatgacatagcgaactattctttcgccttttactaaagaata 42409654  T

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Target: chr1; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 288 - 342
Target Start/End: Complemental strand, 2176417 - 2176363
Alignment:
Q  288 ggagtcgtgtgatgatgacatagcgaactattctttcgccttttactaaagaata 342  Q
    |||| |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  2176417 ggagacgtgtgataatgacatagcgaactattctttcgccttttactaaagaata 2176363  T

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Target: chr1; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 288 - 342
Target Start/End: Original strand, 10542395 - 10542449
Alignment:
Q  288 ggagtcgtgtgatgatgacatagcgaactattctttcgccttttactaaagaata 342  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  10542395 ggagccgtgtgatgatcacatagcgaactattctttcgccttttactaaagaata 10542449  T

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Target: chr1; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 288 - 342
Target Start/End: Complemental strand, 42202490 - 42202436
Alignment:
Q  288 ggagtcgtgtgatgatgacatagcgaactattctttcgccttttactaaagaata 342  Q
    |||| |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  42202490 ggagccgtgtgttgatgacatagcgaactattctttcgccttttactaaagaata 42202436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 288 - 342
Target Start/End: Complemental strand, 42211358 - 42211304
Alignment:
Q  288 ggagtcgtgtgatgatgacatagcgaactattctttcgccttttactaaagaata 342  Q
    |||| |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  42211358 ggagccgtgtgttgatgacatagcgaactattctttcgccttttactaaagaata 42211304  T

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Target: chr1; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 288 - 342
Target Start/End: Original strand, 45151996 - 45152050
Alignment:
Q  288 ggagtcgtgtgatgatgacatagcgaactattctttcgccttttactaaagaata 342  Q
    |||| |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  45151996 ggagccgtgtgataatgacatagcgaactattctttcgccttttactaaagaata 45152050  T

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Target: chr1; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 294 - 342
Target Start/End: Original strand, 42417650 - 42417698
Alignment:
Q  294 gtgtgatgatgacatagcgaactattctttcgccttttactaaagaata 342  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  42417650 gtgtgatgatgacatagcgaattattctttcgccttttactaaagaata 42417698  T

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Target: chr1; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 283 - 342
Target Start/End: Complemental strand, 43014432 - 43014373
Alignment:
Q  283 atcatggagtcgtgtgatgatgacatagcgaactattctttcgccttttactaaagaata 342  Q
    |||| |||| ||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  43014432 atcacggagccgtgtgatgagcacatagcgaactattctttcgccttttactaaagaata 43014373  T

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Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 293 - 342
Target Start/End: Original strand, 51795025 - 51795074
Alignment:
Q  293 cgtgtgatgatgacatagcgaactattctttcgccttttactaaagaata 342  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  51795025 cgtgtgatgatgacatagcaaactattgtttcgccttttactaaagaata 51795074  T

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Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 285 - 342
Target Start/End: Complemental strand, 31558318 - 31558261
Alignment:
Q  285 catggagtcgtgtgatgatgacatagcgaactattctttcgccttttactaaagaata 342  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  31558318 catggagccgtgtgatgatcacatagcgaactattctttcgccttttactaaagaata 31558261  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 283 - 342
Target Start/End: Complemental strand, 31555235 - 31555176
Alignment:
Q  283 atcatggagtcgtgtgatgatgacatagcgaactattctttcgccttttactaaagaata 342  Q
    |||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  31555235 atcacggagccgtgtgatgatcacatagcgaactattctttcgccttttactaaagaata 31555176  T

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Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 283 - 342
Target Start/End: Original strand, 31878234 - 31878293
Alignment:
Q  283 atcatggagtcgtgtgatgatgacatagcgaactattctttcgccttttactaaagaata 342  Q
    |||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  31878234 atcacggagccgtgtgatgatcacatagcgaactattctttcgccttttactaaagaata 31878293  T

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Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 293 - 339
Target Start/End: Complemental strand, 13568475 - 13568429
Alignment:
Q  293 cgtgtgatgatgacatagcgaactattctttcgccttttactaaaga 339  Q
    |||||||| || |||||||||||||||||||||||||||||||||||    
T  13568475 cgtgtgataatcacatagcgaactattctttcgccttttactaaaga 13568429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 36164594 - 36164629
Alignment:
Q  1 ttcaaatcagttctgctttccatcttaagtggcaat 36  Q
    ||||||||||||||||||||||||||||| ||||||    
T  36164594 ttcaaatcagttctgctttccatcttaagcggcaat 36164629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 285 - 342
Target Start/End: Original strand, 46446214 - 46446271
Alignment:
Q  285 catggagtcgtgtgatgatgacatagcgaactattctttcgccttttactaaagaata 342  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  46446214 catggagccttgtgatgatgacatagcgaactattctttcgccttttactaaagaata 46446271  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 283 - 342
Target Start/End: Complemental strand, 21884162 - 21884103
Alignment:
Q  283 atcatggagtcgtgtgatgatgacatagcgaactattctttcgccttttactaaagaata 342  Q
    |||| |||| ||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  21884162 atcacggagccgtgtgatgagcacatagcgaactattctttcgccttttactaaagaata 21884103  T

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Target: chr5 (Bit Score: 49; Significance: 6e-19; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 282 - 342
Target Start/End: Original strand, 10109298 - 10109358
Alignment:
Q  282 gatcatggagtcgtgtgatgatgacatagcgaactattctttcgccttttactaaagaata 342  Q
    ||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  10109298 gatcacggagccgtgtgatgatcacatagcgaactattctttcgccttttactaaagaata 10109358  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 288 - 342
Target Start/End: Original strand, 10105891 - 10105945
Alignment:
Q  288 ggagtcgtgtgatgatgacatagcgaactattctttcgccttttactaaagaata 342  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  10105891 ggagccgtgtgatgatcacatagcgaactattctttcgccttttactaaagaata 10105945  T

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Target: chr5; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 288 - 342
Target Start/End: Complemental strand, 10212385 - 10212331
Alignment:
Q  288 ggagtcgtgtgatgatgacatagcgaactattctttcgccttttactaaagaata 342  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  10212385 ggagccgtgtgatgatcacatagcgaactattctttcgccttttactaaagaata 10212331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 294 - 342
Target Start/End: Original strand, 10102813 - 10102861
Alignment:
Q  294 gtgtgatgatgacatagcgaactattctttcgccttttactaaagaata 342  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  10102813 gtgtgatgatcacatagcgaactattctttcgccttttactaaagaata 10102861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 285 - 337
Target Start/End: Complemental strand, 12104660 - 12104608
Alignment:
Q  285 catggagtcgtgtgatgatgacatagcgaactattctttcgccttttactaaa 337  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  12104660 catggagccgtgtgatgatcacatagcgaactattctttcgccttttactaaa 12104608  T

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Target: chr5; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 283 - 342
Target Start/End: Complemental strand, 10209839 - 10209780
Alignment:
Q  283 atcatggagtcgtgtgatgatgacatagcgaactattctttcgccttttactaaagaata 342  Q
    |||| |||| ||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  10209839 atcacggagccgtgtgatgaacacatagcgaactattctttcgccttttactaaagaata 10209780  T

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Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 296 - 342
Target Start/End: Original strand, 13856027 - 13856073
Alignment:
Q  296 gtgatgatgacatagcgaactattctttcgccttttactaaagaata 342  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||    
T  13856027 gtgatgatcacatagcgaactattctttcgccttttactaaagaata 13856073  T

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Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 293 - 342
Target Start/End: Complemental strand, 9674818 - 9674769
Alignment:
Q  293 cgtgtgatgatgacatagcgaactattctttcgccttttactaaagaata 342  Q
    ||||||||||| ||| || |||||||||||||||||||||||||||||||    
T  9674818 cgtgtgatgatcacaaagtgaactattctttcgccttttactaaagaata 9674769  T

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Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 297 - 342
Target Start/End: Complemental strand, 12109442 - 12109397
Alignment:
Q  297 tgatgatgacatagcgaactattctttcgccttttactaaagaata 342  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||    
T  12109442 tgatgatcacatagcaaactattctttcgccttttactaaagaata 12109397  T

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Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 286 - 342
Target Start/End: Complemental strand, 9660342 - 9660286
Alignment:
Q  286 atggagtcgtgtgatgatgacatagcgaactattctttcgccttttactaaagaata 342  Q
    |||||| | ||||||||| ||||||||||||||| ||| ||||||||||||||||||    
T  9660342 atggagccttgtgatgatcacatagcgaactattattttgccttttactaaagaata 9660286  T

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Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 288 - 340
Target Start/End: Complemental strand, 37278787 - 37278735
Alignment:
Q  288 ggagtcgtgtgatgatgacatagcgaactattctttcgccttttactaaagaa 340  Q
    |||| ||||||||||  ||||| ||||||||||||||||||||||||||||||    
T  37278787 ggagccgtgtgatgagcacataacgaactattctttcgccttttactaaagaa 37278735  T

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Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 342
Target Start/End: Complemental strand, 3467698 - 3467669
Alignment:
Q  313 aactattctttcgccttttactaaagaata 342  Q
    ||||||||||||||||||||||||||||||    
T  3467698 aactattctttcgccttttactaaagaata 3467669  T

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Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 342
Target Start/End: Complemental strand, 10215978 - 10215930
Alignment:
Q  294 gtgtgatgatgacatagcgaactattctttcgccttttactaaagaata 342  Q
    ||||| |||| ||||||  ||||||||||| ||||||||||||||||||    
T  10215978 gtgtgttgatcacatagtaaactattcttttgccttttactaaagaata 10215930  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 288 - 342
Target Start/End: Original strand, 17889425 - 17889479
Alignment:
Q  288 ggagtcgtgtgatgatgacatagcgaactattctttcgccttttactaaagaata 342  Q
    |||| ||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  17889425 ggagccgtgtgatgagcacatagcgaactattctttcgccttttactaaagaata 17889479  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 289 - 342
Target Start/End: Complemental strand, 46362599 - 46362546
Alignment:
Q  289 gagtcgtgtgatgatgacatagcgaactattctttcgccttttactaaagaata 342  Q
    ||||||||| ||||||||||||||||||||| |||||| |||||||||||||||    
T  46362599 gagtcgtgtaatgatgacatagcgaactattatttcgctttttactaaagaata 46362546  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 309 - 342
Target Start/End: Original strand, 36790859 - 36790892
Alignment:
Q  309 agcgaactattctttcgccttttactaaagaata 342  Q
    ||||||||||||||||||||||||||||||||||    
T  36790859 agcgaactattctttcgccttttactaaagaata 36790892  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 309 - 342
Target Start/End: Complemental strand, 49588234 - 49588201
Alignment:
Q  309 agcgaactattctttcgccttttactaaagaata 342  Q
    ||||||||||||||||||||||||||||||||||    
T  49588234 agcgaactattctttcgccttttactaaagaata 49588201  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 342
Target Start/End: Original strand, 25698817 - 25698865
Alignment:
Q  294 gtgtgatgatgacatagcgaactattctttcgccttttactaaagaata 342  Q
    |||||||||| |||||| | ||||||||||||||||||| |||||||||    
T  25698817 gtgtgatgatcacatagtggactattctttcgccttttattaaagaata 25698865  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 300 - 339
Target Start/End: Original strand, 20918686 - 20918725
Alignment:
Q  300 tgatgacatagcgaactattctttcgccttttactaaaga 339  Q
    |||| ||||||| |||||||||||||||||||||||||||    
T  20918686 tgatcacatagcaaactattctttcgccttttactaaaga 20918725  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 305 - 342
Target Start/End: Original strand, 33891612 - 33891649
Alignment:
Q  305 acatagcgaactattctttcgccttttactaaagaata 342  Q
    ||||||||||||||||||||||||||||||||||||||    
T  33891612 acatagcgaactattctttcgccttttactaaagaata 33891649  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 294 - 342
Target Start/End: Original strand, 26568347 - 26568395
Alignment:
Q  294 gtgtgatgatgacatagcgaactattctttcgccttttactaaagaata 342  Q
    |||||||||  ||||||||||||||||||| ||||||||||||||||||    
T  26568347 gtgtgatgagcacatagcgaactattcttttgccttttactaaagaata 26568395  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 309 - 342
Target Start/End: Original strand, 5900549 - 5900582
Alignment:
Q  309 agcgaactattctttcgccttttactaaagaata 342  Q
    ||||||||||||||||||||||||||||||||||    
T  5900549 agcgaactattctttcgccttttactaaagaata 5900582  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 312 - 342
Target Start/End: Complemental strand, 43633480 - 43633450
Alignment:
Q  312 gaactattctttcgccttttactaaagaata 342  Q
    |||||||||||||||||||||||||||||||    
T  43633480 gaactattctttcgccttttactaaagaata 43633450  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 345
Target Start/End: Complemental strand, 2341369 - 2341333
Alignment:
Q  309 agcgaactattctttcgccttttactaaagaataatc 345  Q
    ||||||||||||||||||||||||| |||||| ||||    
T  2341369 agcgaactattctttcgccttttacaaaagaaaaatc 2341333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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