View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9079_high_1 (Length: 475)

Name: NF9079_high_1
Description: NF9079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9079_high_1
NF9079_high_1
[»] chr2 (5 HSPs)
chr2 (17-437)||(5700870-5701291)
chr2 (227-307)||(32245913-32245993)
chr2 (227-307)||(19384264-19384344)
chr2 (130-185)||(27763990-27764046)
chr2 (132-180)||(32245795-32245843)
[»] chr4 (3 HSPs)
chr4 (134-366)||(33528946-33529173)
chr4 (391-437)||(33528875-33528921)
chr4 (207-279)||(5473322-5473397)
[»] chr8 (1 HSPs)
chr8 (227-307)||(33803629-33803709)
[»] chr7 (2 HSPs)
chr7 (391-437)||(48715280-48715326)
chr7 (213-279)||(21269169-21269238)
[»] chr5 (1 HSPs)
chr5 (132-185)||(43549839-43549893)
[»] chr1 (2 HSPs)
chr1 (134-183)||(44617440-44617489)
chr1 (389-433)||(49937085-49937128)


Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 17 - 437
Target Start/End: Complemental strand, 5701291 - 5700870
Alignment:
Q  17 tttaaattaacttgtataaaacgctataaactagtaaaagtaaaatagaagttcgtgagtaagtaacaattacatggcatatatttcttagtcaaataaa 116  Q
    ||||||||||||||||||||||||||||||||||||||| |||| || ||| |||||||||||| |||||||||| |||||||||||| |||||||||||    
T  5701291 tttaaattaacttgtataaaacgctataaactagtaaaaataaactataagctcgtgagtaagtgacaattacatagcatatatttctgagtcaaataaa 5701192  T
Q  117 cttataacgcgctataagagaagtgctatatagcactggacttattttcacgaaaattcacggacgcttgaacatatataagcaatctgaacggtatcta 216  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  5701191 cttataacgcgctataagagaagtgctgtatagtactggacttattttcatgaaaattcacggacgcttgaacatatataagcaatctgaacggtatcta 5701092  T
Q  217 ttgttatgcacactatgtcttcattgttatgcaattcaacaaaagaaaaagatggtcaacaccgtttcaatttgttgcaccgtttgcttaagattgattt 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||     
T  5701091 ttgttatgcacactatgtcttcattgttatgcaattcaacaaaagaaaaagatggtcaacaccgtttcaatttgttgcaccgtttgcttaagattaattc 5700992  T
Q  317 cctcaaacnnnnnnnnntagtgttaaagattaaagagtgctaacctttcacg-nnnnnnnnnnnnnnnnnnngaatgcttacctttaaactctcttttaa 415  Q
    ||||||||         |||||||||| |||||||||| |||||||||||||                    ||||||||||||||||||||||||||||    
T  5700991 cctcaaacaaaaaaaaatagtgttaaaaattaaagagttctaacctttcacgaaaaaaaaataaaataaaaagaatgcttacctttaaactctcttttaa 5700892  T
Q  416 ttaattaaatcacttactattc 437  Q
    ||||||||||||||||||||||    
T  5700891 ttaattaaatcacttactattc 5700870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 227 - 307
Target Start/End: Original strand, 32245913 - 32245993
Alignment:
Q  227 cactatgtcttcattgttatgcaattcaacaaaagaaaaagatggtcaacaccgtttcaatttgttgcaccgtttgcttaa 307  Q
    |||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||| |||||| ||||||||||| ||||    
T  32245913 cactatgtcttcattgttatgcaattcaaccaaataaaaaggtggtcaacaccgtttgaatttgatgcaccgtttgtttaa 32245993  T

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Target: chr2; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 227 - 307
Target Start/End: Original strand, 19384264 - 19384344
Alignment:
Q  227 cactatgtcttcattgttatgcaattcaacaaaagaaaaagatggtcaacaccgtttcaatttgttgcaccgtttgcttaa 307  Q
    |||||||||||||||||||||||||||||| ||| |||||| |||| |||||||||| |||||| ||||||||||| ||||    
T  19384264 cactatgtcttcattgttatgcaattcaaccaaataaaaaggtggttaacaccgtttgaatttgatgcaccgtttgtttaa 19384344  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 130 - 185
Target Start/End: Complemental strand, 27764046 - 27763990
Alignment:
Q  130 ataagagaagtgctatatagcactggacttattttcac-gaaaattcacggacgctt 185  Q
    |||||||||||||||||||| || ||| |||||||||| | ||||||||||||||||    
T  27764046 ataagagaagtgctatatagtacgggaattattttcacgggaaattcacggacgctt 27763990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 132 - 180
Target Start/End: Original strand, 32245795 - 32245843
Alignment:
Q  132 aagagaagtgctatatagcactggacttattttcacgaaaattcacgga 180  Q
    |||||||||||||||||| || | | ||||||||| |||||||||||||    
T  32245795 aagagaagtgctatatagtacggaagttattttcatgaaaattcacgga 32245843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 123; Significance: 5e-63; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 134 - 366
Target Start/End: Complemental strand, 33529173 - 33528946
Alignment:
Q  134 gagaagtgctatatagcactggacttattttcacgaaaattcacggacgcttgaacatatataagcaatctgaacggtatctattgttatgcacactatg 233  Q
    |||||||||||||||| || ||| ||||||| |||||||||||||||||||||| ||||||  || || |||||||||||||||||||||||||  ||||    
T  33529173 gagaagtgctatatagtaccggatttattttgacgaaaattcacggacgcttgaccatata--agaaacctgaacggtatctattgttatgcac--tatg 33529078  T
Q  234 tcttcattgttatgcaattcaacaaaagaaaaagatggtcaacaccgtttcaatttgttgcaccgtttgcttaagattgatttcctcaaacnnnnnnnnn 333  Q
    ||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||| ||||||||||||| ||| |||||| |             
T  33529077 tcttcattgttatgcaattcaaccaaagaaaaaggtggtcagcaccgtttcaatttgttgcaccatttgcttaagattaattccctcaatc-gaaaaaat 33528979  T
Q  334 tagtgttaaagattaaagagtgctaacctttca 366  Q
    |||||||||||||||||||||||||||||||||    
T  33528978 tagtgttaaagattaaagagtgctaacctttca 33528946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 391 - 437
Target Start/End: Complemental strand, 33528921 - 33528875
Alignment:
Q  391 tgcttacctttaaactctcttttaattaattaaatcacttactattc 437  Q
    |||||||||||||||||||| |||||||||||||| |||||||||||    
T  33528921 tgcttacctttaaactctctattaattaattaaattacttactattc 33528875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 207 - 279
Target Start/End: Original strand, 5473322 - 5473397
Alignment:
Q  207 acggtatctattgttatgca---cactatgtcttcattgttatgcaattcaacaaaagaaaaagatggtcaacacc 279  Q
    ||||| ||||||||||||||   |||||||| |  |||||||||||||||| | |||||||||| |||||||||||    
T  5473322 acggtttctattgttatgcagtgcactatgtgtctattgttatgcaattcagccaaagaaaaaggtggtcaacacc 5473397  T

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Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 227 - 307
Target Start/End: Complemental strand, 33803709 - 33803629
Alignment:
Q  227 cactatgtcttcattgttatgcaattcaacaaaagaaaaagatggtcaacaccgtttcaatttgttgcaccgtttgcttaa 307  Q
    |||||||||||||||||||||||||||||| ||| |||||| ||||||||| ||||| ||||||||||||| |||| ||||    
T  33803709 cactatgtcttcattgttatgcaattcaaccaaataaaaaggtggtcaacatcgtttgaatttgttgcaccttttgtttaa 33803629  T

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Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 391 - 437
Target Start/End: Original strand, 48715280 - 48715326
Alignment:
Q  391 tgcttacctttaaactctcttttaattaattaaatcacttactattc 437  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  48715280 tgcttacctttaaactctcttttaattaattaaatcacttactattc 48715326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 279
Target Start/End: Original strand, 21269169 - 21269238
Alignment:
Q  213 tctattgttatgca---cactatgtcttcattgttatgcaattcaacaaaagaaaaagatggtcaacacc 279  Q
    ||||||||||||||   ||||||||||  |||||||||||||| | | |||||||||| |||||||||||    
T  21269169 tctattgttatgcagtgcactatgtctctattgttatgcaatttagccaaagaaaaaggtggtcaacacc 21269238  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 185
Target Start/End: Complemental strand, 43549893 - 43549839
Alignment:
Q  132 aagagaagtgctatatagcactggacttattttcac-gaaaattcacggacgctt 185  Q
    |||||||||||||||||| || ||| |||||||||| | ||||||||||||||||    
T  43549893 aagagaagtgctatatagtacgggaattattttcacgggaaattcacggacgctt 43549839  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 183
Target Start/End: Original strand, 44617440 - 44617489
Alignment:
Q  134 gagaagtgctatatagcactggacttattttcacgaaaattcacggacgc 183  Q
    |||||||||||||||| || | | |||||||||| |||||||||||||||    
T  44617440 gagaagtgctatatagtacggaaattattttcacaaaaattcacggacgc 44617489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 389 - 433
Target Start/End: Original strand, 49937085 - 49937128
Alignment:
Q  389 aatgcttacctttaaactctcttttaattaattaaatcacttact 433  Q
    |||||| ||||||||||| ||||||| ||||||||||||||||||    
T  49937085 aatgctaacctttaaactttctttta-ttaattaaatcacttact 49937128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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