View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9079_high_3 (Length: 373)

Name: NF9079_high_3
Description: NF9079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9079_high_3
NF9079_high_3
[»] chr3 (18 HSPs)
chr3 (11-358)||(1448031-1448380)
chr3 (11-358)||(1425941-1426288)
chr3 (18-330)||(1470546-1470857)
chr3 (140-242)||(19757714-19757816)
chr3 (140-190)||(19736812-19736862)
chr3 (127-205)||(24302077-24302155)
chr3 (131-197)||(51448288-51448354)
chr3 (131-197)||(52138465-52138531)
chr3 (131-204)||(25191016-25191089)
chr3 (130-190)||(29817141-29817201)
chr3 (83-175)||(32490325-32490417)
chr3 (130-242)||(48221420-48221532)
chr3 (131-197)||(38849731-38849797)
chr3 (131-197)||(47542290-47542356)
chr3 (257-304)||(11581207-11581254)
chr3 (127-194)||(46145786-46145853)
chr3 (128-169)||(26592043-26592084)
chr3 (141-190)||(27917219-27917268)
[»] chr1 (22 HSPs)
chr1 (86-301)||(28528173-28528388)
chr1 (88-242)||(32066805-32066956)
chr1 (88-190)||(40419275-40419377)
chr1 (131-197)||(8671557-8671623)
chr1 (131-197)||(51601695-51601761)
chr1 (116-204)||(6640748-6640836)
chr1 (131-195)||(43240962-43241026)
chr1 (131-197)||(49347972-49348039)
chr1 (131-197)||(1210382-1210448)
chr1 (131-197)||(32083324-32083390)
chr1 (130-168)||(32405092-32405130)
chr1 (148-197)||(19936175-19936224)
chr1 (140-197)||(34827681-34827738)
chr1 (141-197)||(51441343-51441399)
chr1 (136-167)||(52641060-52641091)
chr1 (141-242)||(7921574-7921675)
chr1 (86-167)||(16273438-16273519)
chr1 (141-242)||(27445545-27445646)
chr1 (130-167)||(37463474-37463511)
chr1 (130-242)||(12807621-12807733)
chr1 (261-305)||(18793459-18793503)
chr1 (95-175)||(52421031-52421111)
[»] chr8 (15 HSPs)
chr8 (86-305)||(25985134-25985351)
chr8 (86-198)||(41444882-41444994)
chr8 (140-197)||(15215849-15215906)
chr8 (131-197)||(12492421-12492487)
chr8 (131-197)||(36565820-36565886)
chr8 (141-242)||(13984682-13984782)
chr8 (129-169)||(3285124-3285164)
chr8 (131-190)||(36544789-36544848)
chr8 (138-242)||(38667203-38667305)
chr8 (131-197)||(42854583-42854649)
chr8 (131-204)||(4033066-4033139)
chr8 (141-194)||(43732226-43732279)
chr8 (86-190)||(18849701-18849805)
chr8 (136-198)||(28300686-28300745)
chr8 (146-190)||(45332073-45332117)
[»] chr4 (22 HSPs)
chr4 (107-202)||(10775993-10776088)
chr4 (119-241)||(39754906-39755028)
chr4 (133-188)||(30807237-30807292)
chr4 (131-197)||(435866-435932)
chr4 (131-197)||(23906880-23906946)
chr4 (131-197)||(33226846-33226912)
chr4 (131-197)||(48174672-48174738)
chr4 (130-193)||(55768960-55769023)
chr4 (130-193)||(55833216-55833279)
chr4 (140-242)||(27450707-27450809)
chr4 (131-197)||(31960393-31960459)
chr4 (131-197)||(56374927-56374993)
chr4 (128-242)||(17666572-17666683)
chr4 (136-242)||(17667863-17667966)
chr4 (131-195)||(47265785-47265849)
chr4 (253-304)||(15183618-15183669)
chr4 (131-197)||(1777594-1777660)
chr4 (130-232)||(30853052-30853154)
chr4 (131-197)||(53707431-53707497)
chr4 (149-242)||(1211924-1212017)
chr4 (141-241)||(7092747-7092847)
chr4 (142-190)||(20917630-20917678)
[»] chr2 (20 HSPs)
chr2 (131-242)||(11992640-11992751)
chr2 (131-197)||(2610165-2610231)
chr2 (131-197)||(8180417-8180483)
chr2 (77-175)||(26433786-26433884)
chr2 (107-204)||(876745-876842)
chr2 (220-311)||(7292714-7292805)
chr2 (129-164)||(28317381-28317416)
chr2 (131-242)||(41763583-41763694)
chr2 (131-197)||(4807229-4807295)
chr2 (53-190)||(12904527-12904664)
chr2 (140-190)||(13148959-13149009)
chr2 (131-197)||(24584185-24584251)
chr2 (131-197)||(38453199-38453265)
chr2 (131-197)||(45368203-45368268)
chr2 (132-245)||(9460266-9460379)
chr2 (141-245)||(33594800-33594904)
chr2 (131-166)||(12475031-12475066)
chr2 (147-241)||(14769943-14770037)
chr2 (149-197)||(452201-452249)
chr2 (255-311)||(12904729-12904785)
[»] chr5 (20 HSPs)
chr5 (129-242)||(43558348-43558461)
chr5 (93-229)||(21915485-21915621)
chr5 (131-242)||(3394347-3394458)
chr5 (86-237)||(6368464-6368615)
chr5 (115-204)||(3096803-3096892)
chr5 (130-197)||(2076053-2076120)
chr5 (130-197)||(20318627-20318694)
chr5 (131-197)||(3301486-3301552)
chr5 (131-197)||(28977436-28977502)
chr5 (128-189)||(37124204-37124265)
chr5 (131-190)||(1288175-1288234)
chr5 (131-190)||(16347988-16348047)
chr5 (130-197)||(17341780-17341847)
chr5 (140-243)||(36200428-36200531)
chr5 (131-197)||(1274902-1274968)
chr5 (131-197)||(10638934-10639000)
chr5 (131-197)||(12492966-12493032)
chr5 (136-166)||(23979874-23979904)
chr5 (143-197)||(24178173-24178227)
chr5 (93-169)||(14099919-14099995)
[»] scaffold0024 (1 HSPs)
scaffold0024 (140-242)||(82367-82469)
[»] scaffold0113 (1 HSPs)
scaffold0113 (142-197)||(12177-12232)
[»] chr6 (8 HSPs)
chr6 (151-242)||(2689313-2689404)
chr6 (131-197)||(10100436-10100502)
chr6 (140-242)||(20428170-20428272)
chr6 (141-242)||(5631464-5631566)
chr6 (144-197)||(9706426-9706479)
chr6 (58-162)||(17222232-17222337)
chr6 (130-168)||(3632652-3632690)
chr6 (143-197)||(5258729-5258783)
[»] chr7 (15 HSPs)
chr7 (131-197)||(32630244-32630310)
chr7 (140-242)||(38606651-38606753)
chr7 (131-197)||(46356430-46356496)
chr7 (86-175)||(32484079-32484168)
chr7 (138-305)||(43793514-43793678)
chr7 (131-190)||(33350392-33350451)
chr7 (131-197)||(36651631-36651697)
chr7 (131-197)||(49028904-49028970)
chr7 (131-197)||(11593597-11593663)
chr7 (86-168)||(24436505-24436587)
chr7 (131-197)||(37616553-37616619)
chr7 (131-197)||(39906958-39907024)
chr7 (131-168)||(31004861-31004898)
chr7 (134-166)||(24550294-24550326)
chr7 (140-236)||(36869829-36869925)
[»] scaffold0570 (1 HSPs)
scaffold0570 (140-197)||(2849-2906)
[»] scaffold0171 (1 HSPs)
scaffold0171 (140-197)||(5838-5895)
[»] scaffold0606 (1 HSPs)
scaffold0606 (107-237)||(9270-9400)
[»] scaffold0018 (1 HSPs)
scaffold0018 (143-197)||(31117-31171)


Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 11 - 358
Target Start/End: Complemental strand, 1448380 - 1448031
Alignment:
Q  11 agagagcagaattacttgtgaggttagatactttgagaaaatcttaaaaa-catttggctttcacataagtagaa-aaagacaaagtatatgaaataaaa 108  Q
    |||||| |||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||| ||||||| ||||||||| ||||||||||||||    
T  1448380 agagagaagaattacttttgaggttagatactttgagaaaatcttaaaaaacgtttggctttcacatgagtagaagaaagacaaaatatatgaaataaaa 1448281  T
Q  109 ttttaacaagaggtgaaacatttctagcttagaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttgggtttatagtgaaa 208  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  1448280 ttttaacaagaggtgaaacatttctagcttagaggtaaaagttggagatcatatcatatcaaaagttgcatggtttaaatattttgggtttatagtgaaa 1448181  T
Q  209 aacaacaaagaaataaaaggagatgtaaatcatcaaaccttgcatgggtggttgaaatgaaggaatgtctcgtgtgttttatgtgatgcgaaagtactac 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  1448180 aacaacaaagaaataaaaggagatgtaaatcatcaaaccttgcatgggtggttgaaatggaggaatgcctcgtgtgttttatgtgatgcgaaagtactac 1448081  T
Q  309 tcacgtgttgaaagaattttttatcgaacatcaataaaattgatgatgtt 358  Q
    ||||||||||||| || |||||||||||||||||||||| ||||||||||    
T  1448080 tcacgtgttgaaataaatttttatcgaacatcaataaaactgatgatgtt 1448031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 11 - 358
Target Start/End: Complemental strand, 1426288 - 1425941
Alignment:
Q  11 agagagcagaattacttgtgaggttagatactttgagaaaatcttaaaaacatttggctttcacataagtagaaaaagacaaagtatatgaaataaaatt 110  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  1426288 agagagaagaattacttgtgaggttagatactttgagaaaatcttaaaaacatttggctttcacatatgtagaaaaagacaaagtatatgaaataaaatt 1426189  T
Q  111 ttaacaagaggtgaaacatttctagcttagaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttgggtttatagtgaaaaa 210  Q
    |||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||  ||||||    
T  1426188 ttaacaagaggtgaaacatttctaacttaaaggtgaaagttggagatcatattataccaaaagttgtatggtttaaatattttgggtttataaagaaaaa 1426089  T
Q  211 caacaaagaaataaaaggagatgtaaatcatcaaa-ccttgcatgggtggttgaaatgaaggaatgtctcgtgtgttttatgtgatgcgaaagtactact 309  Q
    ||||||| ||||| ||||||||||||||||||||| || || ||||||||||||| |  | ||||| |||||||||||| |||||| |||||||||   |    
T  1426088 caacaaataaatagaaggagatgtaaatcatcaaacccatggatgggtggttgaactagacgaatgcctcgtgtgttttgtgtgattcgaaagtaccgtt 1425989  T
Q  310 cacgtgttgaaagaa-ttttttatcgaacatcaataaaattgatgatgtt 358  Q
    |||  |||||||||| ||||||||||||||||||||||  ||||||||||    
T  1425988 cac--gttgaaagaatttttttatcgaacatcaataaagctgatgatgtt 1425941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 18 - 330
Target Start/End: Complemental strand, 1470857 - 1470546
Alignment:
Q  18 agaattacttgtgaggttagatactttgagaaaat-cttaaaaacatttggctttcacataagtagaa-aaagacaaagtatatgaaataaaattttaac 115  Q
    |||||| || ||||||||||||||||| ||||||| || |||||| ||||| ||||  || ||||||| ||||||| ||||||||||||||||||||| |    
T  1470857 agaattcctagtgaggttagatacttttagaaaattctaaaaaacgtttgggtttcgtatgagtagaataaagacagagtatatgaaataaaattttagc 1470758  T
Q  116 aagaggtgaaacatttctagcttagaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttgggtttatagtgaaaaacaaca 215  Q
    |||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  1470757 aagaggtgaatcatttattgcttagaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatatttttggtttatagtgaaaaacaaca 1470658  T
Q  216 aagaaataaaaggagatgtaaatcatcaaaccttgcatgggtggttgaaatgaaggaatgtctcgtgtgttttatgtgatgcgaaagtactactcacgtg 315  Q
    ||  |||| ||||| ||||||||||||||||| |  ||||||||| |||||| |||||||||| |||| ||||||||||||| |||| || ||||||       
T  1470657 aatgaatagaaggaaatgtaaatcatcaaaccctagatgggtggtagaaatggaggaatgtcttgtgtattttatgtgatgc-aaagcaccactcac--a 1470561  T
Q  316 ttgaaagaatttttt 330  Q
    |||||||||||||||    
T  1470560 ttgaaagaatttttt 1470546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 140 - 242
Target Start/End: Original strand, 19757714 - 19757816
Alignment:
Q  140 gaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttgggtttatagtgaaaaacaacaaagaaataaaaggagatgtaaatc 239  Q
    |||||||||||||||||||||||||||||  ||||| |||||||||||||| ||||||  |||||  |||| |||| |||||||| || |||||||||||    
T  19757714 gaggtgaaagttggagatcatatcataccccaagttacatggtttaaatatcttgggtccatagtacaaaataacagagaaataagagcagatgtaaatc 19757813  T
Q  240 atc 242  Q
    |||    
T  19757814 atc 19757816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 140 - 190
Target Start/End: Original strand, 19736812 - 19736862
Alignment:
Q  140 gaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatat 190  Q
    |||||||||||||||||||||||||||||  ||||| ||||||||||||||    
T  19736812 gaggtgaaagttggagatcatatcataccccaagttacatggtttaaatat 19736862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 127 - 205
Target Start/End: Complemental strand, 24302155 - 24302077
Alignment:
Q  127 catttctagcttagaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttgggtttatagtg 205  Q
    ||||||||| |||||||||  |||| |||||||| ||||| ||  |||||||||||||||||||||||| || ||||||    
T  24302155 catttctagtttagaggtggcagttagagatcatgtcatagcatgagttgcatggtttaaatattttggattcatagtg 24302077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 131 - 197
Target Start/End: Complemental strand, 51448354 - 51448288
Alignment:
Q  131 tctagcttagaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttgggt 197  Q
    |||| ||| |||||||||||||||||||||||||||||  ||||| || ||||||||||| ||||||    
T  51448354 tctaccttggaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgggt 51448288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 131 - 197
Target Start/End: Original strand, 52138465 - 52138531
Alignment:
Q  131 tctagcttagaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttgggt 197  Q
    |||| ||| |||||||||||||||||||||||||||||  ||||| || ||||||||||| ||||||    
T  52138465 tctaccttggaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgggt 52138531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 131 - 204
Target Start/End: Original strand, 25191016 - 25191089
Alignment:
Q  131 tctagcttagaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttgggtttatagt 204  Q
    |||| ||| ||||||||||||||||||||||||||| |  ||||| || ||||||||||| |||||| ||||||    
T  25191016 tctaccttggaggtgaaagttggagatcatatcatagcccaagttacacggtttaaatatcttgggtctatagt 25191089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 130 - 190
Target Start/End: Original strand, 29817141 - 29817201
Alignment:
Q  130 ttctagcttagaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatat 190  Q
    ||||| ||| |||||||||||||||||||||||||||||| ||||| || |||| ||||||    
T  29817141 ttctatcttggaggtgaaagttggagatcatatcataccataagttacacggttcaaatat 29817201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 83 - 175
Target Start/End: Complemental strand, 32490417 - 32490325
Alignment:
Q  83 aaaaagacaaagtatatgaaataaaattttaacaagaggtgaaacatttctagcttagaggtgaaagttggagatcatatcataccaaaagtt 175  Q
    ||||||||| ||||||||||||  || |||| ||| |||||||   |||||| |||| || ||||||||| |||||||||||||||| |||||    
T  32490417 aaaaagacagagtatatgaaatgcaagtttagcaaaaggtgaagtgtttctaacttatagatgaaagttgaagatcatatcataccacaagtt 32490325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 130 - 242
Target Start/End: Original strand, 48221420 - 48221532
Alignment:
Q  130 ttctagcttagaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttgggtttatagtgaaaaacaacaaagaaataaaagga 229  Q
    ||||| ||||||||||||||||| |||||||||||||||| ||||| ||   ||||||||| |||| || |||||  ||||  ||| |||| || ||| |    
T  48221420 ttctatcttagaggtgaaagttgaagatcatatcataccacaagttacacattttaaatatcttggattcatagtacaaaatgacagagaagtagaagca 48221519  T
Q  230 gatgtaaatcatc 242  Q
     ||||||||||||    
T  48221520 tatgtaaatcatc 48221532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 197
Target Start/End: Original strand, 38849731 - 38849797
Alignment:
Q  131 tctagcttagaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttgggt 197  Q
    |||| ||| |||||||||||||||||||||||||||||  || || || ||||||||||| ||||||    
T  38849731 tctaccttggaggtgaaagttggagatcatatcatacctcaatttacacggtttaaatatcttgggt 38849797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 197
Target Start/End: Complemental strand, 47542356 - 47542290
Alignment:
Q  131 tctagcttagaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttgggt 197  Q
    |||| ||| ||||||||||||||||||||| |||||||  ||||| || ||||||||||| ||||||    
T  47542356 tctaccttggaggtgaaagttggagatcatttcataccccaagttacacggtttaaatatcttgggt 47542290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 257 - 304
Target Start/End: Original strand, 11581207 - 11581254
Alignment:
Q  257 tggttgaaatgaaggaatgtctcgtgtgttttatgtgatgcgaaagta 304  Q
    ||||||||||||| |||||||||  |||||||||||||| ||||||||    
T  11581207 tggttgaaatgaatgaatgtctcaggtgttttatgtgattcgaaagta 11581254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 127 - 194
Target Start/End: Original strand, 46145786 - 46145853
Alignment:
Q  127 catttctagcttagaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttg 194  Q
    ||||| || ||||||||| |||||||||||| || |||||||| |||||  | |||||||||||||||    
T  46145786 catttttaacttagaggttaaagttggagattatgtcataccacaagttatacggtttaaatattttg 46145853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 169
Target Start/End: Complemental strand, 26592084 - 26592043
Alignment:
Q  128 atttctagcttagaggtgaaagttggagatcatatcatacca 169  Q
    ||||||| ||||||||||||||||||| | ||||||||||||    
T  26592084 atttctatcttagaggtgaaagttggataacatatcatacca 26592043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 190
Target Start/End: Original strand, 27917219 - 27917268
Alignment:
Q  141 aggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatat 190  Q
    |||||||||||||||||||||||||| |  ||||| || |||||||||||    
T  27917219 aggtgaaagttggagatcatatcatatcccaagttacacggtttaaatat 27917268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 4e-26; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 86 - 301
Target Start/End: Original strand, 28528173 - 28528388
Alignment:
Q  86 aagacaaagtatatgaaataaaattttaacaagaggtgaaacatttctagcttagaggtgaaagttggagatcatatcataccaaaagttgcatggttta 185  Q
    |||||||||||||||  ||| | ||||| ||||||| ||| | |||||||| |||||||||||||||||||||||| ||||||| ||||| ||  |||||    
T  28528173 aagacaaagtatatgggatatagttttagcaagaggcgaagcgtttctagcctagaggtgaaagttggagatcatagcataccacaagttacacagttta 28528272  T
Q  186 aatattttgggtttatagtgaaaaacaacaaagaaataaaaggagatgtaaatcatc-aaaccttgcatgggtggttgaaatgaaggaatgtctcgtgtg 284  Q
    ||||| |||||| |||  |  |||||||   ||||||| |||||| |||||| |||| || ||  || ||||||||||||||  |||| || |||  |||    
T  28528273 aatatcttgggtctatgttacaaaacaatggagaaatagaaggaggtgtaaaccatcgaatccgagc-tgggtggttgaaattgaggagtgcctcaggtg 28528371  T
Q  285 ttttatgtgatgcgaaa 301  Q
    |||||||||||||||||    
T  28528372 ttttatgtgatgcgaaa 28528388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 88 - 242
Target Start/End: Complemental strand, 32066956 - 32066805
Alignment:
Q  88 gacaaagtatatgaaataaaattttaacaagaggtgaaacatttctagcttagaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaa 187  Q
    |||| |||||||| |||  ||||||| ||| |||||||  | ||||| ||||||||||||| ||||||||||||||||||   ||||| ||  |||||||    
T  32066956 gacatagtatatgtaatgtaattttagcaaaaggtgaagtagttctaccttagaggtgaaaattggagatcatatcatac---aagttacacagtttaaa 32066860  T
Q  188 tattttgggtttatagtgaaaaacaacaaagaaataaaaggagatgtaaatcatc 242  Q
    ||||||||||| |||||  ||||  ||| ||||||||||| | ||||||||||||    
T  32066859 tattttgggttcatagtacaaaatgacagagaaataaaagcaaatgtaaatcatc 32066805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 88 - 190
Target Start/End: Original strand, 40419275 - 40419377
Alignment:
Q  88 gacaaagtatatgaaataaaattttaacaagaggtgaaacatttctagcttagaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaa 187  Q
    |||| |||||||| |||  ||||||| ||| |||  || |||||||||| || ||||||||||||||||||||||||||||| ||||| ||  |||||||    
T  40419275 gacatagtatatggaatgtaattttagcaaaaggcaaagcatttctagcgtaaaggtgaaagttggagatcatatcataccacaagttacacagtttaaa 40419374  T
Q  188 tat 190  Q
    |||    
T  40419375 tat 40419377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 131 - 197
Target Start/End: Original strand, 8671557 - 8671623
Alignment:
Q  131 tctagcttagaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttgggt 197  Q
    |||| ||| |||||||||||||||||||||||||||||  ||||| || ||||||||||| ||||||    
T  8671557 tctaccttggaggtgaaagttggagatcatatcataccctaagttacacggtttaaatatcttgggt 8671623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 131 - 197
Target Start/End: Original strand, 51601695 - 51601761
Alignment:
Q  131 tctagcttagaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttgggt 197  Q
    |||| ||| |||||||||||||||||||||||||||||  ||||| || ||||||||||| ||||||    
T  51601695 tctaccttggaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgggt 51601761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 116 - 204
Target Start/End: Original strand, 6640748 - 6640836
Alignment:
Q  116 aagaggtgaaacatttctagcttagaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttgggtttatagt 204  Q
    ||||| |||||| |||||||  |||||||||||||| |||||||||| | |||| ||||| || ||||||||||| ||| || ||||||    
T  6640748 aagagatgaaacgtttctagtgtagaggtgaaagttagagatcatattacaccacaagttacacggtttaaatatcttgagtctatagt 6640836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 131 - 195
Target Start/End: Complemental strand, 43241026 - 43240962
Alignment:
Q  131 tctagcttagaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttgg 195  Q
    |||| ||| |||||||||||||||||||||||||||||  ||||| || ||||||||||| ||||    
T  43241026 tctaccttggaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgg 43240962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 131 - 197
Target Start/End: Complemental strand, 49348039 - 49347972
Alignment:
Q  131 tctagcttagaggtgaaagttggagatcatatcataccaaaagttgca-tggtttaaatattttgggt 197  Q
    |||| ||| |||||||||||||||||||||||||||||  ||||| || |||||||||||| ||||||    
T  49348039 tctaccttggaggtgaaagttggagatcatatcataccccaagttacactggtttaaatatcttgggt 49347972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 197
Target Start/End: Original strand, 1210382 - 1210448
Alignment:
Q  131 tctagcttagaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttgggt 197  Q
    |||| ||| |||||||||||||||||||||||||||||  ||||| ||  |||||||||| ||||||    
T  1210382 tctaccttggaggtgaaagttggagatcatatcataccccaagttacacagtttaaatatcttgggt 1210448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 197
Target Start/End: Complemental strand, 32083390 - 32083324
Alignment:
Q  131 tctagcttagaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttgggt 197  Q
    |||| ||| |||||||||||||||||||||||||||||  ||||||||   ||||||||| ||||||    
T  32083390 tctaccttggaggtgaaagttggagatcatatcataccccaagttgcacaatttaaatatcttgggt 32083324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 168
Target Start/End: Complemental strand, 32405130 - 32405092
Alignment:
Q  130 ttctagcttagaggtgaaagttggagatcatatcatacc 168  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  32405130 ttctagcttagaggttaaagttggagatcatatcatacc 32405092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 148 - 197
Target Start/End: Original strand, 19936175 - 19936224
Alignment:
Q  148 agttggagatcatatcataccaaaagttgcatggtttaaatattttgggt 197  Q
    |||||||||||||||||||||  ||||| |||||||||||||| ||||||    
T  19936175 agttggagatcatatcataccccaagttacatggtttaaatatcttgggt 19936224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 140 - 197
Target Start/End: Complemental strand, 34827738 - 34827681
Alignment:
Q  140 gaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttgggt 197  Q
    ||||||||||| |||||||||||||||||  ||||| || ||||||||||| ||||||    
T  34827738 gaggtgaaagtgggagatcatatcataccctaagttacaaggtttaaatatcttgggt 34827681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 197
Target Start/End: Complemental strand, 51441399 - 51441343
Alignment:
Q  141 aggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttgggt 197  Q
    ||||||||||||||||||||||||||||  ||||| ||  |||||||||| ||||||    
T  51441399 aggtgaaagttggagatcatatcataccccaagttacacagtttaaatatcttgggt 51441343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 136 - 167
Target Start/End: Complemental strand, 52641091 - 52641060
Alignment:
Q  136 cttagaggtgaaagttggagatcatatcatac 167  Q
    ||||||||||||||||||||||||||||||||    
T  52641091 cttagaggtgaaagttggagatcatatcatac 52641060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 242
Target Start/End: Original strand, 7921574 - 7921675
Alignment:
Q  141 aggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttgggtttatagtgaaaaacaacaaagaaataaaaggagatgtaaatca 240  Q
    ||||||||||||||||||||||| ||||| ||||| || | |||| |||| |||| |  |||||  ||||| |   ||||||| ||||||||||||| ||    
T  7921574 aggtgaaagttggagatcatatcttaccacaagttacacgatttatatatcttggatccatagtacaaaacgattgagaaatagaaggagatgtaaacca 7921673  T
Q  241 tc 242  Q
    ||    
T  7921674 tc 7921675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 167
Target Start/End: Complemental strand, 16273519 - 16273438
Alignment:
Q  86 aagacaaagtatatgaaataaaattttaacaagaggtgaaacatttctagcttagaggtgaaagttggagatcatatcatac 167  Q
    |||||| |||||||| |||  ||||| ||||| || ||||| | ||  | ||||||| ||||||||||||||||||||||||    
T  16273519 aagacatagtatatgtaatgtaatttcaacaaaagatgaaatagtttgaccttagagatgaaagttggagatcatatcatac 16273438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 242
Target Start/End: Original strand, 27445545 - 27445646
Alignment:
Q  141 aggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttgggtttatagtgaaaaacaacaaagaaataaaaggagatgtaaatca 240  Q
    |||||||||||||||||| |||||||||  ||||| || ||||||| ||| ||||||  |||||  ||||  |   ||||||| ||| ||||||||||||    
T  27445545 aggtgaaagttggagatcttatcataccccaagttacacggtttaattatgttgggtccatagtacaaaatgatggagaaatagaagcagatgtaaatca 27445644  T
Q  241 tc 242  Q
    ||    
T  27445645 tc 27445646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 167
Target Start/End: Complemental strand, 37463511 - 37463474
Alignment:
Q  130 ttctagcttagaggtgaaagttggagatcatatcatac 167  Q
    ||||| ||| ||||||||||||||||||||||||||||    
T  37463511 ttctaccttggaggtgaaagttggagatcatatcatac 37463474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 242
Target Start/End: Complemental strand, 12807733 - 12807621
Alignment:
Q  130 ttctagcttagaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttgggtttatagtgaaaaacaacaaagaaataaaagga 229  Q
    ||||| |||||||||||||||||  |||| |||||||| | ||||| ||   ||||||||| |||| |  |||||  ||||| || |||||||| |||      
T  12807733 ttctaccttagaggtgaaagttgaggatcgtatcatactacaagttacacaatttaaatatcttggatccatagtataaaacgacgaagaaatagaagct 12807634  T
Q  230 gatgtaaatcatc 242  Q
    |||||||||||||    
T  12807633 gatgtaaatcatc 12807621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 305
Target Start/End: Complemental strand, 18793503 - 18793459
Alignment:
Q  261 tgaaatgaaggaatgtctcgtgtgttttatgtgatgcgaaagtac 305  Q
    ||||||| |||| ||||||  ||||||||||||||||||||||||    
T  18793503 tgaaatggaggagtgtctcaggtgttttatgtgatgcgaaagtac 18793459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 175
Target Start/End: Original strand, 52421031 - 52421111
Alignment:
Q  95 tatatgaaataaaattttaacaagaggtgaaacatttctagcttagaggtgaaagttggagatcatatcataccaaaagtt 175  Q
    ||||||||||  ||||| | ||| |||||||  || |||| |||| ||||||||||| ||||||||||||| ||| |||||    
T  52421031 tatatgaaatggaatttcagcaaaaggtgaagtatctctaccttataggtgaaagttagagatcatatcatgccacaagtt 52421111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 86 - 305
Target Start/End: Original strand, 25985134 - 25985351
Alignment:
Q  86 aagacaaagtatatgaaataaaattttaacaagaggtgaaacatttctagcttagaggtgaaagttggagatcatatcataccaaaagttgcatggttta 185  Q
    |||||| |||||||| |||  || |||| ||||||| ||| ||||||||||||||||||||||||||  ||||||||||||||| ||||| || ||||||    
T  25985134 aagacagagtatatggaatgtaagtttagcaagaggcgaagcatttctagcttagaggtgaaagttg--gatcatatcataccacaagttacacggttta 25985231  T
Q  186 aatattttgggtttatagtgaaaaacaacaaagaaataaaaggagatgtaaatcatcaaaccttgcatgggtggttgaaatgaaggaatgtctcgtgtgt 285  Q
    ||||| |||| | ||||||  ||||  |   ||||||| ||||||||||||| |||  || |    |||||| ||||||||| |||| || |||  ||||    
T  25985232 aatatattggatctatagtacaaaaatatggagaaatagaaggagatgtaaaccattgaatccaaaatgggtagttgaaatggaggagtgcctcaagtgt 25985331  T
Q  286 tttatgtgatgcgaaagtac 305  Q
    ||||| ||||||| ||||||    
T  25985332 tttatatgatgcggaagtac 25985351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 86 - 198
Target Start/End: Complemental strand, 41444994 - 41444882
Alignment:
Q  86 aagacaaagtatatgaaataaaattttaacaagaggtgaaacatttctagcttagaggtgaaagttggagatcatatcataccaaaagttgcatggttta 185  Q
    |||| |||||||||| |||  ||||||| ||| ||| ||| |||||||| |||||||||||||| ||||||||||||||||||| ||||| | |||||||    
T  41444994 aagataaagtatatggaatgtaattttagcaaaaggcgaagcatttctaacttagaggtgaaaggtggagatcatatcataccacaagttacttggttta 41444895  T
Q  186 aatattttgggtt 198  Q
    ||||| |||||||    
T  41444894 aatatcttgggtt 41444882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 140 - 197
Target Start/End: Complemental strand, 15215906 - 15215849
Alignment:
Q  140 gaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttgggt 197  Q
    ||||||||||||||||||||||||||||| |||||| || ||||||||||| ||||||    
T  15215906 gaggtgaaagttggagatcatatcatacccaaagttacacggtttaaatatattgggt 15215849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 131 - 197
Target Start/End: Complemental strand, 12492487 - 12492421
Alignment:
Q  131 tctagcttagaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttgggt 197  Q
    |||| ||| |||||||||||||||||||||||||||||  ||||| || ||||||||||| ||||||    
T  12492487 tctaccttggaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgggt 12492421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 131 - 197
Target Start/End: Complemental strand, 36565886 - 36565820
Alignment:
Q  131 tctagcttagaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttgggt 197  Q
    |||| ||| |||||||||||||||||||||||||||||  ||||| || ||||||||||| ||||||    
T  36565886 tctaccttggaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgggt 36565820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 141 - 242
Target Start/End: Original strand, 13984682 - 13984782
Alignment:
Q  141 aggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttgggtttatagtgaaaaacaacaaagaaataaaaggagatgtaaatca 240  Q
    |||||||||  | |||||||||||||||  ||| | || ||||||||||| ||||||  ||||| |||||  ||||||||||||||| ||||||||||||    
T  13984682 aggtgaaagaagaagatcatatcataccccaagatacacggtttaaatatcttgggtccatagt-aaaaatgacaaagaaataaaagcagatgtaaatca 13984780  T
Q  241 tc 242  Q
    ||    
T  13984781 tc 13984782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 129 - 169
Target Start/End: Original strand, 3285124 - 3285164
Alignment:
Q  129 tttctagcttagaggtgaaagttggagatcatatcatacca 169  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  3285124 tttctagcgtagaggtgaaagttggagatcatatcatacca 3285164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 131 - 190
Target Start/End: Original strand, 36544789 - 36544848
Alignment:
Q  131 tctagcttagaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatat 190  Q
    |||| ||| |||||||||||||||||||||||||||||  ||||| || |||||||||||    
T  36544789 tctaccttggaggtgaaagttggagatcatatcataccccaagttacaaggtttaaatat 36544848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 138 - 242
Target Start/End: Original strand, 38667203 - 38667305
Alignment:
Q  138 tagaggtgaaagttggagatcatatcataccaaaagttgcatggttt-aaatattttgggtttatagtgaaaaacaacaaagaaataaaaggagatgtaa 236  Q
    ||||||||||| ||||||||||||||||||   ||||| ||  |||| |||||| ||||||| |||||  ||||| | | ||||||||||| ||||||||    
T  38667203 tagaggtgaaacttggagatcatatcatac---aagttacaaagttttaaatatcttgggttcatagtacaaaacgatagagaaataaaagaagatgtaa 38667299  T
Q  237 atcatc 242  Q
    ||||||    
T  38667300 atcatc 38667305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 197
Target Start/End: Complemental strand, 42854649 - 42854583
Alignment:
Q  131 tctagcttagaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttgggt 197  Q
    |||| ||| |||||||||| ||||||||||||||||||  ||||| || ||||||||||| ||||||    
T  42854649 tctaccttggaggtgaaaggtggagatcatatcataccccaagttacacggtttaaatatcttgggt 42854583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 131 - 204
Target Start/End: Complemental strand, 4033139 - 4033066
Alignment:
Q  131 tctagcttagaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttgggtttatagt 204  Q
    |||| ||| ||| |||||||||||||||||||||||||  ||||| || ||||||| ||| ||||||| |||||    
T  4033139 tctaccttggagatgaaagttggagatcatatcataccccaagttacacggtttaagtatcttgggttcatagt 4033066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 141 - 194
Target Start/End: Complemental strand, 43732279 - 43732226
Alignment:
Q  141 aggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttg 194  Q
    |||||||||||||||||||||||||| || ||||  || |||||||||||||||    
T  43732279 aggtgaaagttggagatcatatcatagcacaagtaacacggtttaaatattttg 43732226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 190
Target Start/End: Complemental strand, 18849805 - 18849701
Alignment:
Q  86 aagacaaagtatatgaaataaaattttaacaagaggtgaaacatttctagcttagaggtgaaagttggagatcatatcataccaaaagttgcatggttta 185  Q
    ||||||||||||||| |||| ||  | ||||| |||||||  | || |  ||||||||| ||| |||||||||||||||||||  ||||| || ||||||    
T  18849805 aagacaaagtatatggaatataacgtcaacaaaaggtgaagtagttatgccttagaggtaaaaattggagatcatatcataccccaagttacacggttta 18849706  T
Q  186 aatat 190  Q
    |||||    
T  18849705 aatat 18849701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 198
Target Start/End: Complemental strand, 28300745 - 28300686
Alignment:
Q  136 cttagaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttgggtt 198  Q
    |||||||||||||| |||||||||||||||||   ||||| ||  |||||||||| |||||||    
T  28300745 cttagaggtgaaagctggagatcatatcatac---aagttacacagtttaaatatcttgggtt 28300686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 190
Target Start/End: Complemental strand, 45332117 - 45332073
Alignment:
Q  146 aaagttggagatcatatcataccaaaagttgcatggtttaaatat 190  Q
    ||||||||||||||| |||||||| ||||| || |||||||||||    
T  45332117 aaagttggagatcatgtcataccacaagttacacggtttaaatat 45332073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 107 - 202
Target Start/End: Complemental strand, 10776088 - 10775993
Alignment:
Q  107 aattttaacaagaggtgaaacatttctagcttagaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttgggtttata 202  Q
    ||||||| ||| ||| ||||  ||||||| ||||||| ||||||||||||||||||||||||| ||||| |||||||||||||| |||||| ||||    
T  10776088 aattttagcaaaaggcgaaatgtttctagtttagaggggaaagttggagatcatatcataccacaagttacatggtttaaatatcttgggtctata 10775993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 119 - 241
Target Start/End: Complemental strand, 39755028 - 39754906
Alignment:
Q  119 aggtgaaacatttctagcttagaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttgggtttatagtgaaaaacaacaaag 218  Q
    ||||||| ||||| | | |||||||||||||||| |||||||||||||||| ||||  ||   |||||||||  ||||| ||||||  ||||| ||||||    
T  39755028 aggtgaagcatttatggtttagaggtgaaagttgaagatcatatcataccacaagtcacacactttaaatatcatgggtctatagtacaaaacgacaaag 39754929  T
Q  219 aaataaaaggagatgtaaatcat 241  Q
    ||||| |||||||||||||||||    
T  39754928 aaatagaaggagatgtaaatcat 39754906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 133 - 188
Target Start/End: Original strand, 30807237 - 30807292
Alignment:
Q  133 tagcttagaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaat 188  Q
    |||| |||||||||||||||||||||||||||||||| ||||| || |||||||||    
T  30807237 tagcatagaggtgaaagttggagatcatatcataccacaagttacacggtttaaat 30807292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 131 - 197
Target Start/End: Original strand, 435866 - 435932
Alignment:
Q  131 tctagcttagaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttgggt 197  Q
    |||| ||| |||||||||||||||||||||||||||||  ||||| || ||||||||||| ||||||    
T  435866 tctaccttggaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgggt 435932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 131 - 197
Target Start/End: Complemental strand, 23906946 - 23906880
Alignment:
Q  131 tctagcttagaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttgggt 197  Q
    |||| ||| |||||||||||||||||||||||||||||  ||||| || ||||||||||| ||||||    
T  23906946 tctaccttggaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgggt 23906880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 131 - 197
Target Start/End: Original strand, 33226846 - 33226912
Alignment:
Q  131 tctagcttagaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttgggt 197  Q
    |||| ||| |||||||||||||||||||||||||||||  ||||| || ||||||||||| ||||||    
T  33226846 tctaccttggaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgggt 33226912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 131 - 197
Target Start/End: Complemental strand, 48174738 - 48174672
Alignment:
Q  131 tctagcttagaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttgggt 197  Q
    |||| ||| |||||||||||||||||||||||||||||  ||||| || ||||||||||| ||||||    
T  48174738 tctaccttggaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgggt 48174672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 130 - 193
Target Start/End: Complemental strand, 55769023 - 55768960
Alignment:
Q  130 ttctagcttagaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatatttt 193  Q
    ||||| ||||||||||||||||| ||||||| |||||||| ||||  || ||||||||||||||    
T  55769023 ttctaccttagaggtgaaagttgaagatcatgtcataccacaagtaacacggtttaaatatttt 55768960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 130 - 193
Target Start/End: Complemental strand, 55833279 - 55833216
Alignment:
Q  130 ttctagcttagaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatatttt 193  Q
    ||||| ||||||||||||||||| ||||||| |||||||| ||||  || ||||||||||||||    
T  55833279 ttctaccttagaggtgaaagttgaagatcatgtcataccacaagtaacacggtttaaatatttt 55833216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 242
Target Start/End: Complemental strand, 27450809 - 27450707
Alignment:
Q  140 gaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttgggtttatagtgaaaaacaacaaagaaataaaaggagatgtaaatc 239  Q
    |||||||||||||||||||||||||||||  ||||| ||  ||||| |||| ||||||  |||||| ||||  |   ||||||| ||| |||||||||||    
T  27450809 gaggtgaaagttggagatcatatcataccccaagttacacagtttacatatcttgggtccatagtgcaaaatgatggagaaatagaagcagatgtaaatc 27450710  T
Q  240 atc 242  Q
    |||    
T  27450709 atc 27450707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 197
Target Start/End: Complemental strand, 31960459 - 31960393
Alignment:
Q  131 tctagcttagaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttgggt 197  Q
    |||| ||| |||||||||||||||||||||||||||||  || || || ||||||||||| ||||||    
T  31960459 tctaccttggaggtgaaagttggagatcatatcataccccaatttacacggtttaaatatcttgggt 31960393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 197
Target Start/End: Original strand, 56374927 - 56374993
Alignment:
Q  131 tctagcttagaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttgggt 197  Q
    |||| ||| ||||||||||||||||| |||||||||||  ||||| || ||||||||||| ||||||    
T  56374927 tctaccttggaggtgaaagttggagagcatatcataccccaagttacacggtttaaatatcttgggt 56374993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 242
Target Start/End: Complemental strand, 17666683 - 17666572
Alignment:
Q  128 atttctagcttagaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttgggtttatagtgaaaaacaacaaagaaataaaag 227  Q
    ||||||| |||||||||||| ||| |||||||||||||||   ||||| ||  |||||||||| ||||||| | |||  ||||   | ||||||||||||    
T  17666683 atttctatcttagaggtgaacgttagagatcatatcatac---aagttacacagtttaaatatcttgggttcaaagtacaaaatgtcgaagaaataaaag 17666587  T
Q  228 gagatgtaaatcatc 242  Q
     | ||||||||||||    
T  17666586 caaatgtaaatcatc 17666572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 242
Target Start/End: Complemental strand, 17667966 - 17667863
Alignment:
Q  136 cttagaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttgggtttatagtgaaaaacaacaaagaaataaaaggagatgta 235  Q
    ||||||||||||||||||| ||||||||||||   |||||  || |||||||||| ||||||| |||||  ||||  ||  ||||||||| | | |||||    
T  17667966 cttagaggtgaaagttggatatcatatcatac---aagttatatagtttaaatatattgggttcatagtacaaaatgacttagaaataaacgcaaatgta 17667870  T
Q  236 aatcatc 242  Q
    |||||||    
T  17667869 aatcatc 17667863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 195
Target Start/End: Complemental strand, 47265849 - 47265785
Alignment:
Q  131 tctagcttagaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttgg 195  Q
    |||| ||| |||||||||||||||| ||||||||||||  ||||| ||| |||||||||| ||||    
T  47265849 tctaccttggaggtgaaagttggaggtcatatcataccccaagttacatagtttaaatatcttgg 47265785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 253 - 304
Target Start/End: Original strand, 15183618 - 15183669
Alignment:
Q  253 tgggtggttgaaatgaaggaatgtctcgtgtgttttatgtgatgcgaaagta 304  Q
    ||||||||||| ||| |||| ||||||  |||||||||||||||||||||||    
T  15183618 tgggtggttgagatggaggagtgtctcaagtgttttatgtgatgcgaaagta 15183669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 197
Target Start/End: Complemental strand, 1777660 - 1777594
Alignment:
Q  131 tctagcttagaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttgggt 197  Q
    |||| ||| ||||||||||||||| |||||||||||||  ||||| || | ||||||||| ||||||    
T  1777660 tctaccttggaggtgaaagttggaaatcatatcataccccaagttacacgttttaaatatcttgggt 1777594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 232
Target Start/End: Original strand, 30853052 - 30853154
Alignment:
Q  130 ttctagcttagaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttgggtttatagtgaaaaacaacaaagaaataaaagga 229  Q
    ||||||||||||| ||||| ||||||| ||| |||||||| ||| | ||  |||||||||| ||||||  |||||  ||| | ||| |||||||||| ||    
T  30853052 ttctagcttagagttgaaatttggagaacatgtcataccacaagctacacagtttaaatatcttgggtccatagtacaaagcgacagagaaataaaaaga 30853151  T
Q  230 gat 232  Q
    |||    
T  30853152 gat 30853154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 197
Target Start/End: Original strand, 53707431 - 53707497
Alignment:
Q  131 tctagcttagaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttgggt 197  Q
    |||| ||| ||||||||||||| |||||||||||||||  ||||| || ||| ||||||| ||||||    
T  53707431 tctaccttggaggtgaaagttgaagatcatatcataccccaagttacacggtctaaatatcttgggt 53707497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 242
Target Start/End: Complemental strand, 1212017 - 1211924
Alignment:
Q  149 gttggagatcatatcataccaaaagttgcatggtttaaatattttgggtttatagtgaaaaacaacaaagaaataaaaggagatgtaaatcatc 242  Q
    ||||||||||||||||||||  | ||| ||| |||||||||| ||| ||  |||||  |||| |||| ||||||| ||| || |||||||||||    
T  1212017 gttggagatcatatcataccttacgttacatagtttaaatatcttgtgtccatagtacaaaataacagagaaatagaagcaggtgtaaatcatc 1211924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 241
Target Start/End: Complemental strand, 7092847 - 7092747
Alignment:
Q  141 aggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttgggtttatagtgaaaaacaacaaagaaataaaaggagatgtaaatca 240  Q
    |||||||||||| ||||||||||||| |  || || || |||||||||||| ||||| ||||||  |||| ||| || ||||| | | ||||||| ||||    
T  7092847 aggtgaaagttgaagatcatatcatatcttaaattacacggtttaaatattgtgggtctatagtataaaataacgaataaatagatgcagatgtacatca 7092748  T
Q  241 t 241  Q
    |    
T  7092747 t 7092747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 142 - 190
Target Start/End: Original strand, 20917630 - 20917678
Alignment:
Q  142 ggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatat 190  Q
    ||||||||||| |||||||||||||||| ||||| ||  ||||||||||    
T  20917630 ggtgaaagttgaagatcatatcataccataagttacacagtttaaatat 20917678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 131 - 242
Target Start/End: Complemental strand, 11992751 - 11992640
Alignment:
Q  131 tctagcttagaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttgggtttatagtgaaaaacaacaaagaaataaaaggag 230  Q
    |||| |||||||||||||||||||||||||||||||||  ||||| || ||||||||||| |||||| ||||||  ||||  |   ||||||| ||| ||    
T  11992751 tctaccttagaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgggtctatagtacaaaatgatggagaaatagaagcag 11992652  T
Q  231 atgtaaatcatc 242  Q
    ||||||||||||    
T  11992651 atgtaaatcatc 11992640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 131 - 197
Target Start/End: Original strand, 2610165 - 2610231
Alignment:
Q  131 tctagcttagaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttgggt 197  Q
    |||| ||| |||||||||||||||||||||||||||||  ||||| || ||||||||||| ||||||    
T  2610165 tctaccttggaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgggt 2610231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 131 - 197
Target Start/End: Original strand, 8180417 - 8180483
Alignment:
Q  131 tctagcttagaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttgggt 197  Q
    |||| ||| ||||||||||||||||||||||||||||   ||||| || ||||||||||||||||||    
T  8180417 tctaccttggaggtgaaagttggagatcatatcatactccaagttacacggtttaaatattttgggt 8180483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 77 - 175
Target Start/End: Original strand, 26433786 - 26433884
Alignment:
Q  77 aagtagaaaaagacaaagtatatgaaataaaattttaacaagaggtgaaacatttctagcttagaggtgaaagttggagatcatatcataccaaaagtt 175  Q
    ||||||||  |||||||||||||| ||| ||||| ||  || ||||  || ||||||| ||||||| ||||||||||||||||| |||||||| |||||    
T  26433786 aagtagaagcagacaaagtatatggaatgaaattgtagaaaaaggtttaatatttctaacttagagatgaaagttggagatcatgtcataccacaagtt 26433884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 107 - 204
Target Start/End: Original strand, 876745 - 876842
Alignment:
Q  107 aattttaacaagaggtgaaacatttctagcttagaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttgggtttatagt 204  Q
    ||||||| | ||||| ||| | || ||||| |||||||||||||||||||||||||| ||||| ||||| ||  |||||||||| |||| | ||||||    
T  876745 aattttagccagaggagaagcgttcctagcatagaggtgaaagttggagatcatatcctaccacaagttacacagtttaaatatgttggatctatagt 876842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 220 - 311
Target Start/End: Original strand, 7292714 - 7292805
Alignment:
Q  220 aataaaaggagatgtaaatcatcaaaccttgcatgggtggttgaaatgaaggaatgtctcgtgtgttttatgtgatgcgaaagtactactca 311  Q
    |||| ||||||||||||| ||||||| |     |||||||||||||||||||| || |||  ||||||||| ||||||||||||||| ||||    
T  7292714 aatagaaggagatgtaaaccatcaaatccaagttgggtggttgaaatgaaggagtgactcaggtgttttatatgatgcgaaagtactgctca 7292805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 129 - 164
Target Start/End: Original strand, 28317381 - 28317416
Alignment:
Q  129 tttctagcttagaggtgaaagttggagatcatatca 164  Q
    ||||||||||||||||||||||||||||||||||||    
T  28317381 tttctagcttagaggtgaaagttggagatcatatca 28317416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 131 - 242
Target Start/End: Complemental strand, 41763694 - 41763583
Alignment:
Q  131 tctagcttagaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttgggtttatagtgaaaaacaacaaagaaataaaaggag 230  Q
    |||| ||| |||||||||||||||||| ||||||||||  |||||||| | ||||||||| ||||||  |||||  ||||   |  ||||||| ||| ||    
T  41763694 tctaccttggaggtgaaagttggagattatatcataccccaagttgcacgatttaaatatcttgggtccatagtacaaaatgtcggagaaatagaagcag 41763595  T
Q  231 atgtaaatcatc 242  Q
    ||||||||||||    
T  41763594 atgtaaatcatc 41763583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 197
Target Start/End: Original strand, 4807229 - 4807295
Alignment:
Q  131 tctagcttagaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttgggt 197  Q
    |||| ||| |||||||||||||||||||||||||||||  ||||| ||  |||||||||| ||||||    
T  4807229 tctaccttggaggtgaaagttggagatcatatcataccccaagttacacagtttaaatatcttgggt 4807295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 190
Target Start/End: Original strand, 12904527 - 12904664
Alignment:
Q  53 cttaaaaacatttggctttcacataagtagaaa-aagacaaagtatatgaaataaaattttaacaagaggtgaaacatttctagcttagaggtgaaagtt 151  Q
    |||| |||| |||||||| ||||| |||||||| |||||  |||||||  |||  ||||| | ||| ||| ||||| ||||||| ||||||||  || ||    
T  12904527 cttagaaacgtttggcttccacatgagtagaaataagacggagtatatagaatgtaattt-agcaaaaggcgaaacgtttctagtttagaggtacaaatt 12904625  T
Q  152 ggagatcatatcataccaaaagttgcatggtttaaatat 190  Q
    ||||||||||||||| || ||||| || |||||||||||    
T  12904626 ggagatcatatcatatcacaagttacacggtttaaatat 12904664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 190
Target Start/End: Original strand, 13148959 - 13149009
Alignment:
Q  140 gaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatat 190  Q
    |||||||||||||||||||||||||||||  ||||| || |||||||||||    
T  13148959 gaggtgaaagttggagatcatatcataccccaagttacacggtttaaatat 13149009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 197
Target Start/End: Complemental strand, 24584251 - 24584185
Alignment:
Q  131 tctagcttagaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttgggt 197  Q
    |||| ||| ||||||||||||||||||||||||| |||  ||||| || ||||||||||| ||||||    
T  24584251 tctaccttggaggtgaaagttggagatcatatcagaccgcaagttacacggtttaaatatcttgggt 24584185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 197
Target Start/End: Complemental strand, 38453265 - 38453199
Alignment:
Q  131 tctagcttagaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttgggt 197  Q
    |||| ||| |||||||||||||||||||||||||||||  ||||| || | ||||||||| ||||||    
T  38453265 tctaccttggaggtgaaagttggagatcatatcataccccaagttacacgatttaaatatcttgggt 38453199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 197
Target Start/End: Complemental strand, 45368268 - 45368203
Alignment:
Q  131 tctagcttagaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttgggt 197  Q
    |||| ||| ||||||||||||||||||||||||||||| ||| || || ||||||||||| ||||||    
T  45368268 tctaccttggaggtgaaagttggagatcatatcatacccaaa-ttacacggtttaaatatcttgggt 45368203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 132 - 245
Target Start/End: Original strand, 9460266 - 9460379
Alignment:
Q  132 ctagcttagaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttgggtttatagtgaaaaacaacaaagaaataaaaggaga 231  Q
    ||||||||||| ||||| ||| | ||||| ||| |||| |||||  ||||||| ||||||| || | ||||||  ||||||||  ||||||| || ||||    
T  9460266 ctagcttagagttgaaatttgaaaatcatgtcaaaccacaagttatatggtttgaatatttgggatctatagtataaaacaacggagaaatataatgaga 9460365  T
Q  232 tgtaaatcatcaaa 245  Q
    || |||||||||||    
T  9460366 tgcaaatcatcaaa 9460379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 245
Target Start/End: Complemental strand, 33594904 - 33594800
Alignment:
Q  141 aggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttgggtttatagtgaaaaacaacaaagaaataaaaggagatgtaaatca 240  Q
    ||||||||||||||| |||||||||||||  | || ||  |||||||||| || ||| ||||||  |||||  |  ||||||| ||||||||||||| ||    
T  33594904 aggtgaaagttggagttcatatcataccagcatttacacagtttaaatatcttaggtatatagtacaaaacgtcggagaaatagaaggagatgtaaaaca 33594805  T
Q  241 tcaaa 245  Q
    |||||    
T  33594804 tcaaa 33594800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 131 - 166
Target Start/End: Complemental strand, 12475066 - 12475031
Alignment:
Q  131 tctagcttagaggtgaaagttggagatcatatcata 166  Q
    |||| |||||||||||||||||||||||||||||||    
T  12475066 tctaccttagaggtgaaagttggagatcatatcata 12475031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 241
Target Start/End: Original strand, 14769943 - 14770037
Alignment:
Q  147 aagttggagatcatatcataccaaaagttgcatggtttaaatattttgggtttatagtgaaaaacaacaaagaaataaaaggagatgtaaatcat 241  Q
    |||||||||||||||||||| || ||||| || ||||||||||| || ||   |||||  ||||||||| ||||||  ||| | |||||||||||    
T  14769943 aagttggagatcatatcatagcataagttacacggtttaaatatcttagggccatagtacaaaacaacagagaaattcaagcatatgtaaatcat 14770037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 197
Target Start/End: Complemental strand, 452249 - 452201
Alignment:
Q  149 gttggagatcatatcataccaaaagttgcatggtttaaatattttgggt 197  Q
    ||||||||||||||||||||  ||||| || ||||||||||| ||||||    
T  452249 gttggagatcatatcataccccaagttacacggtttaaatatcttgggt 452201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 311
Target Start/End: Original strand, 12904729 - 12904785
Alignment:
Q  255 ggtggttgaaatgaaggaatgtctcgtgtgttttatgtgatgcgaaagtactactca 311  Q
    |||||||||||| || || ||||||  ||||||||| ||||||||||||| ||||||    
T  12904729 ggtggttgaaataaacgagtgtctcaggtgttttatatgatgcgaaagtattactca 12904785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 129 - 242
Target Start/End: Complemental strand, 43558461 - 43558348
Alignment:
Q  129 tttctagcttagaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttgggtttatagtgaaaaacaacaaagaaataaaagg 228  Q
    ||||||||| ||||||||||||||||||||||| ||||||| ||||| || | ||||||||| || |||  || ||  ||||| ||| ||||||| |||     
T  43558461 tttctagctcagaggtgaaagttggagatcatagcataccacaagttacacgatttaaatatcttaggtccattgtacaaaaccacagagaaatagaagc 43558362  T
Q  229 agatgtaaatcatc 242  Q
    ||||||||||||||    
T  43558361 agatgtaaatcatc 43558348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 93 - 229
Target Start/End: Original strand, 21915485 - 21915621
Alignment:
Q  93 agtatatgaaataaaattttaacaagaggtgaaacatttctagcttagaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattt 192  Q
    |||||||  ||| |||||||||||||||||||| |||||||||   ||||||||||||| ||||| ||||||||  | ||||| || ||||||||||| |    
T  21915485 agtatattgaatgaaattttaacaagaggtgaagcatttctagtgcagaggtgaaagttcgagattatatcataatacaagttacacggtttaaatatat 21915584  T
Q  193 tgggtttatagtgaaaaacaacaaagaaataaaagga 229  Q
    ||| |  |||||  |||| ||| |||||||| |||||    
T  21915585 tggttcaatagtacaaaataacgaagaaatagaagga 21915621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 131 - 242
Target Start/End: Original strand, 3394347 - 3394458
Alignment:
Q  131 tctagcttagaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttgggtttatagtgaaaaacaacaaagaaataaaaggag 230  Q
    |||| ||| |||||||||||||||||||||||||||||  ||||| || ||||||||||| ||||||  |||||  ||||  ||  ||||||| ||| ||    
T  3394347 tctaccttggaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgggtccatagtacaaaatgacggagaaatagaagcag 3394446  T
Q  231 atgtaaatcatc 242  Q
    ||||||||||||    
T  3394447 atgtaaatcatc 3394458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 86 - 237
Target Start/End: Complemental strand, 6368615 - 6368464
Alignment:
Q  86 aagacaaagtatatgaaataaaattttaacaagaggtgaaacatttctagcttagaggtgaaagttggagatcatatcataccaaaagttgcatggttta 185  Q
    ||||||| ||||||| | |  ||||||| ||||||||||||||||||||   |||||||||||| ||||||||||| ||||||| ||||| ||   ||||    
T  6368615 aagacaaggtatatggattgtaattttagcaagaggtgaaacatttctaatgtagaggtgaaagatggagatcataacataccacaagttacacaattta 6368516  T
Q  186 aatattttgggtttatagtgaaaaacaacaaagaaataaaaggagatgtaaa 237  Q
    ||||| |||  | ||||||  ||||| ||  |||||||||| ||||| ||||    
T  6368515 aatatcttgtatctatagtacaaaacgacggagaaataaaaagagatataaa 6368464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 115 - 204
Target Start/End: Original strand, 3096803 - 3096892
Alignment:
Q  115 caagaggtgaaacatttctagcttagaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttgggtttatagt 204  Q
    ||||||| ||| | |||||| | |||||||||||||| |||||||||||  | || ||||| |||||||||||||| |||||||||||||    
T  3096803 caagaggagaagcgtttctatcgtagaggtgaaagttagagatcatatctcagcacaagttacatggtttaaatatcttgggtttatagt 3096892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 130 - 197
Target Start/End: Complemental strand, 2076120 - 2076053
Alignment:
Q  130 ttctagcttagaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttgggt 197  Q
    ||||| ||| |||||||||||||||||||||||||||||  ||||| || ||||||||||| ||||||    
T  2076120 ttctaccttggaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgggt 2076053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 130 - 197
Target Start/End: Original strand, 20318627 - 20318694
Alignment:
Q  130 ttctagcttagaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttgggt 197  Q
    ||||| ||| |||||||||||||||||||||||||||||  ||||| || ||||||||||| ||||||    
T  20318627 ttctaccttggaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgggt 20318694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 131 - 197
Target Start/End: Original strand, 3301486 - 3301552
Alignment:
Q  131 tctagcttagaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttgggt 197  Q
    |||| ||| |||||||||||||||||||||||||||||  ||||| || ||||||||||| ||||||    
T  3301486 tctaccttggaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgggt 3301552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 131 - 197
Target Start/End: Complemental strand, 28977502 - 28977436
Alignment:
Q  131 tctagcttagaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttgggt 197  Q
    |||| |||||||||||||||||||||||||||||||||  ||||  || ||||||||||| ||||||    
T  28977502 tctaccttagaggtgaaagttggagatcatatcataccccaagtcacacggtttaaatatcttgggt 28977436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 189
Target Start/End: Original strand, 37124204 - 37124265
Alignment:
Q  128 atttctagcttagaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaata 189  Q
    ||||||| |||||||||||||||||||||||| ||||||| | ||||| ||| |||||||||    
T  37124204 atttctaccttagaggtgaaagttggagatcaaatcatacaacaagttacattgtttaaata 37124265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 1288234 - 1288175
Alignment:
Q  131 tctagcttagaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatat 190  Q
    |||| ||| |||||||||||||||||||||||||||||  ||||| || |||||||||||    
T  1288234 tctaccttggaggtgaaagttggagatcatatcataccccaagttacacggtttaaatat 1288175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 16348047 - 16347988
Alignment:
Q  131 tctagcttagaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatat 190  Q
    |||| ||| |||||||||||||||||||||||||||||  ||||| || |||||||||||    
T  16348047 tctaccttggaggtgaaagttggagatcatatcataccccaagttacacggtttaaatat 16347988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 130 - 197
Target Start/End: Complemental strand, 17341847 - 17341780
Alignment:
Q  130 ttctagcttagaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttgggt 197  Q
    ||||| ||| |||||| ||||||||||||||||||||||  || || |||||||||||||| ||||||    
T  17341847 ttctaccttggaggtggaagttggagatcatatcatacctgaaattacatggtttaaatatattgggt 17341780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 140 - 243
Target Start/End: Original strand, 36200428 - 36200531
Alignment:
Q  140 gaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttgggtttatagtgaaaaacaacaaagaaataaaaggagatgtaaatc 239  Q
    ||||||||||| |||| ||||||||||||  ||||| ||  |||||||||||||||||| |||||  ||||  ||| |||||||  || | |||||||||    
T  36200428 gaggtgaaagtgggaggtcatatcatacctcaagttacaccgtttaaatattttgggttcatagtacaaaatgacatagaaatagtagcatatgtaaatc 36200527  T
Q  240 atca 243  Q
    ||||    
T  36200528 atca 36200531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 197
Target Start/End: Original strand, 1274902 - 1274968
Alignment:
Q  131 tctagcttagaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttgggt 197  Q
    |||| ||| ||| |||||||||||||||||||||||||  ||||| || ||||||||||| ||||||    
T  1274902 tctaccttggagatgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgggt 1274968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 197
Target Start/End: Original strand, 10638934 - 10639000
Alignment:
Q  131 tctagcttagaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttgggt 197  Q
    |||| ||| ||||||||||||||| |||||||||||||  ||||| || ||||||||||| ||||||    
T  10638934 tctaccttggaggtgaaagttggaaatcatatcataccccaagttacacggtttaaatatcttgggt 10639000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 197
Target Start/End: Complemental strand, 12493032 - 12492966
Alignment:
Q  131 tctagcttagaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttgggt 197  Q
    |||| ||| ||||| |||||||||||||||||||||||  ||||| || ||||||||||| ||||||    
T  12493032 tctaccttggaggtaaaagttggagatcatatcataccccaagttacacggtttaaatatcttgggt 12492966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 166
Target Start/End: Original strand, 23979874 - 23979904
Alignment:
Q  136 cttagaggtgaaagttggagatcatatcata 166  Q
    |||||||||||||||||||||||||||||||    
T  23979874 cttagaggtgaaagttggagatcatatcata 23979904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 197
Target Start/End: Original strand, 24178173 - 24178227
Alignment:
Q  143 gtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttgggt 197  Q
    ||||||||||||||||||||||||||  ||||| || |||||||| || ||||||    
T  24178173 gtgaaagttggagatcatatcataccctaagttacacggtttaaagatcttgggt 24178227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 169
Target Start/End: Original strand, 14099919 - 14099995
Alignment:
Q  93 agtatatgaaataaaattttaacaagaggtgaaacatttctagcttagaggtgaaagttggagatcatatcatacca 169  Q
    |||||||| |||| || |||| ||| |||||||  ||||| | |||| ||| ||||||| |||||||||||||||||    
T  14099919 agtatatggaatataactttagcaaaaggtgaagaatttccaacttaaaggcgaaagttagagatcatatcatacca 14099995  T

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Target: scaffold0024 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 140 - 242
Target Start/End: Original strand, 82367 - 82469
Alignment:
Q  140 gaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttgggtttatagtgaaaaacaacaaagaaataaaaggagatgtaaatc 239  Q
    |||| ||||||||||||| ||||||||||| ||||| || ||||||||||| ||||||  ||||| |||||  ||  ||||||| ||| |||||||||||    
T  82367 gaggcgaaagttggagattatatcataccacaagttacacggtttaaatatcttgggtccatagtaaaaaatgacggagaaatagaagcagatgtaaatc 82466  T
Q  240 atc 242  Q
    |||    
T  82467 atc 82469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 142 - 197
Target Start/End: Complemental strand, 12232 - 12177
Alignment:
Q  142 ggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttgggt 197  Q
    |||||||||||||||||||||||||||  ||||| |||||||||||||| ||||||    
T  12232 ggtgaaagttggagatcatatcataccccaagttacatggtttaaatatcttgggt 12177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 151 - 242
Target Start/End: Original strand, 2689313 - 2689404
Alignment:
Q  151 tggagatcatatcataccaaaagttgcatggtttaaatattttgggtttatagtgaaaaacaacaaagaaataaaaggagatgtaaatcatc 242  Q
    ||||||||||||||||||  ||||| || |||||||||||||||||| ||||||  ||||| ||  ||||||| ||  ||||||||||||||    
T  2689313 tggagatcatatcataccctaagttacacggtttaaatattttgggtctatagtacaaaacgacggagaaatagaatcagatgtaaatcatc 2689404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 131 - 197
Target Start/End: Complemental strand, 10100502 - 10100436
Alignment:
Q  131 tctagcttagaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttgggt 197  Q
    |||| ||| |||||||||||||||||||||||||||||  ||||| || ||||||||||| ||||||    
T  10100502 tctaccttggaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgggt 10100436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 140 - 242
Target Start/End: Complemental strand, 20428272 - 20428170
Alignment:
Q  140 gaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttgggtttatagtgaaaaacaacaaagaaataaaaggagatgtaaatc 239  Q
    |||||||||||||||||||||||||||||| ||||| |  ||||||||||| ||||||  | |||  ||||| ||  | ||||| ||| |||||||||||    
T  20428272 gaggtgaaagttggagatcatatcataccacaagttacgcggtttaaatatattgggtccacagtacaaaacgacggaaaaatagaagcagatgtaaatc 20428173  T
Q  240 atc 242  Q
    |||    
T  20428172 atc 20428170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 242
Target Start/End: Original strand, 5631464 - 5631566
Alignment:
Q  141 aggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatatttt-gggtttatagtgaaaaacaacaaagaaataaaaggagatgtaaatc 239  Q
    ||||||||||| ||||||||||||||||  ||||| || |||||||||||||| ||||  |||||  ||||  ||  ||||||| ||| |||||||||||    
T  5631464 aggtgaaagttagagatcatatcataccccaagttacacggtttaaatatttttgggtccatagtacaaaatgacggagaaatagaagcagatgtaaatc 5631563  T
Q  240 atc 242  Q
    |||    
T  5631564 atc 5631566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 144 - 197
Target Start/End: Original strand, 9706426 - 9706479
Alignment:
Q  144 tgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttgggt 197  Q
    |||||||||||||||||||||||||  ||||| || ||||||||||| ||||||    
T  9706426 tgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgggt 9706479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 58 - 162
Target Start/End: Complemental strand, 17222337 - 17222232
Alignment:
Q  58 aaacatttggctttcacataagtagaaa-aagacaaagtatatgaaataaaattttaacaagaggtgaaacatttctagcttagaggtgaaagttggaga 156  Q
    |||||| |||||||| | |||||||||  |||||| |||||||| |||  ||| ||||||||||||||| | |||||| ||| ||||||||||  | |||    
T  17222337 aaacatatggctttcgcttaagtagaagcaagacatagtatatggaatgtaatcttaacaagaggtgaatcgtttctaactttgaggtgaaagaagaaga 17222238  T
Q  157 tcatat 162  Q
    ||||||    
T  17222237 tcatat 17222232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 168
Target Start/End: Original strand, 3632652 - 3632690
Alignment:
Q  130 ttctagcttagaggtgaaagttggagatcatatcatacc 168  Q
    ||||| ||| |||||||||||||||||||||||||||||    
T  3632652 ttctacctttgaggtgaaagttggagatcatatcatacc 3632690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 197
Target Start/End: Complemental strand, 5258783 - 5258729
Alignment:
Q  143 gtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttgggt 197  Q
    ||||||||||||||||||||||||||  ||||| ||  |||||||||| ||||||    
T  5258783 gtgaaagttggagatcatatcataccccaagttacacagtttaaatatcttgggt 5258729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 131 - 197
Target Start/End: Original strand, 32630244 - 32630310
Alignment:
Q  131 tctagcttagaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttgggt 197  Q
    |||| ||| |||||||||||||||||||||||||||||  ||||| || ||||||||||| ||||||    
T  32630244 tctaccttggaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgggt 32630310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 140 - 242
Target Start/End: Original strand, 38606651 - 38606753
Alignment:
Q  140 gaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttgggtttatagtgaaaaacaacaaagaaataaaaggagatgtaaatc 239  Q
    ||||||||||||||||||||||||||| |  ||||| || ||||||||||| ||||||  |||||  ||||  || |||||||| ||| ||||||||| |    
T  38606651 gaggtgaaagttggagatcatatcatatcccaagttacacggtttaaatatcttgggtccatagtacaaaatgacgaagaaatagaagcagatgtaaacc 38606750  T
Q  240 atc 242  Q
    |||    
T  38606751 atc 38606753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 131 - 197
Target Start/End: Complemental strand, 46356496 - 46356430
Alignment:
Q  131 tctagcttagaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttgggt 197  Q
    |||| ||| |||||||||||||||||||||||||||||  ||||| || ||||||||||| ||||||    
T  46356496 tctaccttggaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgggt 46356430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 86 - 175
Target Start/End: Original strand, 32484079 - 32484168
Alignment:
Q  86 aagacaaagtatatgaaataaaattttaacaagaggtgaaacatttctagcttagaggtgaaagttggagatcatatcataccaaaagtt 175  Q
    |||||||||||| || |||  ||||||| ||||||| |||||||||||| |||||| |||| ||||  | |||||||||||||| |||||    
T  32484079 aagacaaagtatgtggaatgtaattttatcaagaggagaaacatttctatcttagatgtgagagttaaatatcatatcataccacaagtt 32484168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 305
Target Start/End: Complemental strand, 43793678 - 43793514
Alignment:
Q  138 tagaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttgggtttatagtgaaaaacaacaaagaaataaaaggagatgtaaa 237  Q
    |||||||||||||| |||||||||||||||||  |||| ||   ||||||||| |||||| ||||||  ||||  || |||||||   ||||||||||||    
T  43793678 tagaggtgaaagttagagatcatatcataccactagttacacattttaaatatcttgggtctatagtacaaaatgacgaagaaat---aggagatgtaaa 43793582  T
Q  238 tcatcaaaccttgcatgggtggttgaaatgaaggaatgtctcgtgtgttttatgtgatgcgaaagtac 305  Q
     ||||||| ||    | ||||||||||||| |||| |  |||  |||| |||||||||| ||||||||    
T  43793581 ccatcaaatctaagctaggtggttgaaatggaggagttcctcaggtgtattatgtgatgtgaaagtac 43793514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 33350451 - 33350392
Alignment:
Q  131 tctagcttagaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatat 190  Q
    |||| ||| |||||||||||||||||||||||||||||  ||||| || |||||||||||    
T  33350451 tctaccttggaggtgaaagttggagatcatatcataccccaagttacacggtttaaatat 33350392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 197
Target Start/End: Original strand, 36651631 - 36651697
Alignment:
Q  131 tctagcttagaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttgggt 197  Q
    |||| ||| |||||||||||||||||||||||||||||  ||||| |  ||||||||||| ||||||    
T  36651631 tctaccttggaggtgaaagttggagatcatatcataccccaagttacgcggtttaaatatcttgggt 36651697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 197
Target Start/End: Original strand, 49028904 - 49028970
Alignment:
Q  131 tctagcttagaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttgggt 197  Q
    |||| ||| |||||||||||||||||||| ||||||||  ||||| || ||||||||||| ||||||    
T  49028904 tctaccttggaggtgaaagttggagatcagatcataccccaagttacacggtttaaatatcttgggt 49028970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 197
Target Start/End: Original strand, 11593597 - 11593663
Alignment:
Q  131 tctagcttagaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttgggt 197  Q
    |||| ||| ||||||||||||| |||||||||||||||  |||||  | ||||||||||| ||||||    
T  11593597 tctaccttggaggtgaaagttgaagatcatatcataccccaagttagacggtttaaatatcttgggt 11593663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 168
Target Start/End: Complemental strand, 24436587 - 24436505
Alignment:
Q  86 aagacaaagtatatgaaataaaattttaacaagaggtgaaacatttctagcttagaggtgaaagttggagatcatatcatacc 168  Q
    |||||||||||||||||||  ||||||||||| ||| |||| |||| ||   | |||||||||||| ||||||| | ||||||    
T  24436587 aagacaaagtatatgaaatgtaattttaacaaaaggcgaaatatttttattgttgaggtgaaagtttgagatcagaccatacc 24436505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 197
Target Start/End: Original strand, 37616553 - 37616619
Alignment:
Q  131 tctagcttagaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttgggt 197  Q
    |||| ||| |||||||||| ||||||||||||||||||  ||||| || | ||||||||| ||||||    
T  37616553 tctaccttggaggtgaaaggtggagatcatatcataccccaagttacacgatttaaatatcttgggt 37616619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 197
Target Start/End: Complemental strand, 39907024 - 39906958
Alignment:
Q  131 tctagcttagaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttgggt 197  Q
    |||| ||| ||||||||||||||||||||||||||| |  | ||| || ||||||||||| ||||||    
T  39907024 tctaccttggaggtgaaagttggagatcatatcatatcccatgttacacggtttaaatatcttgggt 39906958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 168
Target Start/End: Original strand, 31004861 - 31004898
Alignment:
Q  131 tctagcttagaggtgaaagttggagatcatatcatacc 168  Q
    |||| ||| |||||||||||||||||||||||||||||    
T  31004861 tctaccttggaggtgaaagttggagatcatatcatacc 31004898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 134 - 166
Target Start/End: Complemental strand, 24550326 - 24550294
Alignment:
Q  134 agcttagaggtgaaagttggagatcatatcata 166  Q
    ||||||||||||||||||| |||||||||||||    
T  24550326 agcttagaggtgaaagttgaagatcatatcata 24550294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 236
Target Start/End: Complemental strand, 36869925 - 36869829
Alignment:
Q  140 gaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttgggtttatagtgaaaaacaacaaagaaataaaaggagatgtaa 236  Q
    ||||||||||||||||| |||||||||||  || || |  ||||||||||| |||| |  |||||  ||||  || |||||||||||| ||||||||    
T  36869925 gaggtgaaagttggagagcatatcataccccaaattacgcggtttaaatatcttggatccatagtacaaaatgacgaagaaataaaagcagatgtaa 36869829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0570 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 140 - 197
Target Start/End: Complemental strand, 2906 - 2849
Alignment:
Q  140 gaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttgggt 197  Q
    |||||||||||||||||||||||||||||  ||||| || ||||||||||| ||||||    
T  2906 gaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgggt 2849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 140 - 197
Target Start/End: Original strand, 5838 - 5895
Alignment:
Q  140 gaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttgggt 197  Q
    |||||||||||||||||||||||||||||  ||||| || ||||||||||| ||||||    
T  5838 gaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgggt 5895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0606 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0606
Description:

Target: scaffold0606; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 237
Target Start/End: Original strand, 9270 - 9400
Alignment:
Q  107 aattttaacaagaggtgaaacatttctagcttagaggtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttgggtttatagtga 206  Q
    ||||||| ||| |||||||   ||||||| |||||||| |||||||||||||||||||||  |  |||| || | ||||||||| || |||||||| |      
T  9270 aattttagcaaaaggtgaattgtttctagtttagaggtaaaagttggagatcatatcatattattagttacacgatttaaatatcttaggtttatattat 9369  T
Q  207 aaaacaacaaagaaataaaaggagatgtaaa 237  Q
    ||||| |  |||||||  |||||||||||||    
T  9370 aaaacgatgaagaaatggaaggagatgtaaa 9400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 197
Target Start/End: Original strand, 31117 - 31171
Alignment:
Q  143 gtgaaagttggagatcatatcataccaaaagttgcatggtttaaatattttgggt 197  Q
    ||||||||||||||||||||||||||  ||||| || |||||||| || ||||||    
T  31117 gtgaaagttggagatcatatcataccccaagttacacggtttaaacatcttgggt 31171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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