View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9079_low_3 (Length: 429)
Name: NF9079_low_3
Description: NF9079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9079_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 11 - 411
Target Start/End: Original strand, 7905938 - 7906338
Alignment:
| Q |
11 |
gagatgtttcatcttgatcttacaatgttgatattgttaggctggacacgtgtaacataacttatgcaatggttgtagaaaaagaaagcttaattaagct |
110 |
Q |
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| T |
7905938 |
gagatgtctcatcttgatcttacaatgttgatattgttaggctggacacgtgtaacataacttatgcaatgcttgtagaaaaagaaaacttaattaagct |
7906037 |
T |
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| Q |
111 |
aaagtaccttaactacgttttgtcgagaaagtgcttcaactctagaaggcacaacagcttcagtaacatgttttccaagtccaagctgtccccttttgga |
210 |
Q |
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| T |
7906038 |
aaagtaccttaactacgttttgtcgagaaagtgcttcaactctagaaggcacaacagcttcagtaacatgttttccaagtccaagctgtccccttttgga |
7906137 |
T |
|
| Q |
211 |
catcccccaaacccaagcagacccatcatcaccaacacaacacgaaacaacaccggaagcaaaagcaccacaaaccttcacatgttccaacccctccact |
310 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
7906138 |
catcccccaaacccaaacagacccatcatcaccaacacaacacgaaacaacaccggaagcaaaagcaccacaaacattcacatgttccaacccctccact |
7906237 |
T |
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| Q |
311 |
cttctaggctcattccaagtttctctagcggaaagcccacggcccagctgggcttcgttgtttctaccccaagcccaaagatgaccttgggaagtggttg |
410 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7906238 |
cttctaggctcattccaagtttctctagaggaaagcccacggcccagctgggcttcgttgtttctaccccaagcccaaagatgaccttgggaagtggttg |
7906337 |
T |
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| Q |
411 |
c |
411 |
Q |
| |
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| T |
7906338 |
c |
7906338 |
T |
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