View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9081_high_10 (Length: 262)
Name: NF9081_high_10
Description: NF9081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9081_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 16 - 245
Target Start/End: Complemental strand, 34593466 - 34593238
Alignment:
| Q |
16 |
gatataacactcaaaaaatctaattttccttctgttattgcagataaactaggagttcaaggaaagaaagtgaaaagtactaatgatttggaggtaattt |
115 |
Q |
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| T |
34593466 |
gatataacactcaaaaaatcaaattttccttctgttattgcagacaaactaggagttcaaggaaagaaagtgaaaagtactaatgatttggaggtaactt |
34593367 |
T |
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| Q |
116 |
tcttgttttttgatcccatgatttcatacactatccnnnnnnnnnaataaaatttttgaggtaggcgttagaggatggaagttctccgaggtgccagcaa |
215 |
Q |
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| T |
34593366 |
tcttgt-ttttgatcccttgatttcatacactatcctttttttttaataaaatttttgaggtaggcggtagaggatggaagttctccgaggtgccagcaa |
34593268 |
T |
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| Q |
216 |
ccagttgagatgtcggtgattcctcttgat |
245 |
Q |
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| T |
34593267 |
ccagttgagatgtcggtgtttcctcttgat |
34593238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 110
Target Start/End: Complemental strand, 34577665 - 34577609
Alignment:
| Q |
54 |
tgcagataaactaggagttcaaggaaagaaagtgaaaagtactaatgatttggaggt |
110 |
Q |
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| T |
34577665 |
tgcagataaacttggagttcagggaaagaaagtaaaaagcaacaatgatttagaggt |
34577609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 51 - 110
Target Start/End: Complemental strand, 32589905 - 32589846
Alignment:
| Q |
51 |
tattgcagataaactaggagttcaaggaaagaaagtgaaaagtactaatgatttggaggt |
110 |
Q |
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| T |
32589905 |
tattgcagataaacttggagttcagggaaagaaagtaaaaagcaacaatgatttagaggt |
32589846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 51 - 110
Target Start/End: Complemental strand, 32600353 - 32600294
Alignment:
| Q |
51 |
tattgcagataaactaggagttcaaggaaagaaagtgaaaagtactaatgatttggaggt |
110 |
Q |
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| T |
32600353 |
tattgcagataaacttggagttcagggaaagaaagtaaaaagcaacaatgatttagaggt |
32600294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 115
Target Start/End: Original strand, 24884037 - 24884099
Alignment:
| Q |
53 |
ttgcagataaactaggagttcaaggaaagaaagtgaaaagtactaatgatttggaggtaattt |
115 |
Q |
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| T |
24884037 |
ttgcagacaaattaggaattcaagggaagaaggtgaaaagtaatgatgatttggaggtgattt |
24884099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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