View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9081_high_3 (Length: 471)
Name: NF9081_high_3
Description: NF9081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9081_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 177; Significance: 3e-95; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 46 - 273
Target Start/End: Complemental strand, 2956097 - 2955870
Alignment:
| Q |
46 |
caaatttctttaaggatgttgtgttacgaatgaaaactaaag-taaactcttagctttgtgttggtgttttagattatgcactaaactggaaaaaggctc |
144 |
Q |
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| T |
2956097 |
caaatttcttttaagatgttgtgt-acgaatgaaaactaaagataaacttttagctttgtgttcatgttttaggtaatgcactaaactggaaaaaggctc |
2955999 |
T |
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| Q |
145 |
tctaatagattagtgttatcagtggccttattatatgtgcataaatgaaattttgggcaccgctttgcagatctaacttctcatgttttgagctgccagt |
244 |
Q |
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| T |
2955998 |
tctaatagattagtgttatcagtggccttattatatgtgcataaatgaaattttgggtaccgctttgcagatctaacttctcatgtcttgagctgccagt |
2955899 |
T |
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| Q |
245 |
ataacccatatattaagtacaatgtttgc |
273 |
Q |
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| T |
2955898 |
ataacccatatattaagtacaatgtttgc |
2955870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 270 - 455
Target Start/End: Complemental strand, 2955737 - 2955569
Alignment:
| Q |
270 |
ttgcaaattttaatatataatgtctcaacatagcgtgtgctgtttacatacatttagtatatcagtttttgtttttggttgatgtcaatgcaattccaca |
369 |
Q |
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| T |
2955737 |
ttgcaaattttaatatataatgtctcaacatagcgtgtgctgtttacatgcatttagtatatcagtttttgtta-----------------aattccaca |
2955655 |
T |
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| Q |
370 |
tgattaatggcatatcatggatagaaaaaagaaaagggacatgtatgtatgagactatgatatgcttaaataacagggcaacataa |
455 |
Q |
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| T |
2955654 |
tgattaatggcatatcatggatagaaaaaagaaaagggacgtgtttgtatgagactatgataagcttaaataacagggcaacataa |
2955569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 204 - 258
Target Start/End: Original strand, 28425698 - 28425749
Alignment:
| Q |
204 |
ccgctttgcagatctaacttctcatgttttgagctgccagtataacccatatatt |
258 |
Q |
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| T |
28425698 |
ccgctttgca-atctaacttctcatgttttgagctgcca--acaacccatatatt |
28425749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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