View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9081_high_5 (Length: 371)
Name: NF9081_high_5
Description: NF9081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9081_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 161; Significance: 9e-86; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 39 - 299
Target Start/End: Complemental strand, 25608858 - 25608591
Alignment:
| Q |
39 |
tagcaaatattggaaaaatcaaacaagcagaggcaaacagtatcaagtaagtcatcatgtgttcaacaaaaggaaaataatttagataaaagaaaagaac |
138 |
Q |
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| T |
25608858 |
tagcaaatattg-aaaaatcaaacaagcagcggaaaacagtatcgagtaagtcatcatgagtacaacagaaggataataatttagataaaagaaaagaac |
25608760 |
T |
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| Q |
139 |
acacataccttagaataataccctccac----------cagatcatcatgcatcacaaataataataactctgagtttgtatatatatttttaaaaccaa |
228 |
Q |
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| T |
25608759 |
acacataccttagaataataccctccactccactccaccagatcatcatgcatcacaaataataataactatgagtttgtatatat--ttcaaaaaccaa |
25608662 |
T |
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| Q |
229 |
cacaaaagaagcaaatatgaagggatgcagcctaacacgaatcccagtcaaacacttaatattgatgctct |
299 |
Q |
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| T |
25608661 |
cacaaaagaagcaaatatgaagggatgcaacctaacacgaatccaggtcaaacacttaaaattgatgctct |
25608591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 100 - 165
Target Start/End: Complemental strand, 25607755 - 25607690
Alignment:
| Q |
100 |
ttcaacaaaaggaaaataatttagataaaagaaaagaacacacataccttagaataataccctcca |
165 |
Q |
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| T |
25607755 |
ttcaacaaaagcataataattttgataaaagaaaagaacatacataccttagaagaataccctcca |
25607690 |
T |
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