View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9081_high_8 (Length: 294)
Name: NF9081_high_8
Description: NF9081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9081_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 3 - 244
Target Start/End: Original strand, 7427581 - 7427822
Alignment:
| Q |
3 |
tcaaccaccaaaacgaaaggaacttaattttctctaacaattgttgcagttgttgttccttatgattaaatattatgttatttctttcttttcagattac |
102 |
Q |
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| T |
7427581 |
tcaaacaccaaaacgaaaggagtttaattttctctaacaattgttgcggttgttgttccttaggattaaatattatgttatttctttcttttcagattac |
7427680 |
T |
|
| Q |
103 |
ccaaacgcatgcaaaccaaattaaccgtaaagaagaccgtacaaattttgagaatccacccgtctgactggattaagaaagtcatccgataaatgaaatg |
202 |
Q |
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| T |
7427681 |
ccaaacacatgcaaaccaaattaattgtaaagaagaccgtacaaattttgagaatccacccgtctgaccggattaagaaagtcatccgataaatgaaatg |
7427780 |
T |
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| Q |
203 |
agtcaaccattaagataccaaataatgtcgaagtaattacaa |
244 |
Q |
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| T |
7427781 |
agtcaaccattaagataccaaataatgtcgaagtaattacaa |
7427822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 275
Target Start/End: Original strand, 7428332 - 7428365
Alignment:
| Q |
242 |
caaaaatatattgtcgtttcctggtcacttacct |
275 |
Q |
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| T |
7428332 |
caaaaacatattgtcgtttcctggtcacttacct |
7428365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 127
Target Start/End: Complemental strand, 3394907 - 3394859
Alignment:
| Q |
79 |
gttatttctttcttttcagattacccaaacgcatgcaaaccaaattaac |
127 |
Q |
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| T |
3394907 |
gttatttctttcttttcaaattacccaaactaaagcaagccaaattaac |
3394859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 128
Target Start/End: Complemental strand, 33330474 - 33330425
Alignment:
| Q |
79 |
gttatttctttcttttcagattacccaaacgcatgcaaaccaaattaacc |
128 |
Q |
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| T |
33330474 |
gttatttctttctttccatattacccaaacacaagcaagccaaattaacc |
33330425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 126
Target Start/End: Original strand, 21430912 - 21430957
Alignment:
| Q |
81 |
tatttctttcttttcagattacccaaacgcatgcaaaccaaattaa |
126 |
Q |
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| T |
21430912 |
tatttttttctttccaaattacccaaacacatgcaaaccaaattaa |
21430957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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