View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9081_low_1 (Length: 1063)

Name: NF9081_low_1
Description: NF9081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9081_low_1
NF9081_low_1
[»] chr8 (5 HSPs)
chr8 (521-1026)||(29269272-29269782)
chr8 (20-276)||(29265299-29265555)
chr8 (277-388)||(29266033-29266144)
chr8 (432-523)||(29268985-29269076)
chr8 (389-435)||(29268908-29268954)
[»] scaffold0349 (1 HSPs)
scaffold0349 (704-1026)||(18028-18355)
[»] chr6 (9 HSPs)
chr6 (704-1026)||(27713589-27713916)
chr6 (884-1025)||(26890781-26890927)
chr6 (566-622)||(26641616-26641672)
chr6 (566-622)||(26747582-26747638)
chr6 (644-720)||(27651710-27651784)
chr6 (641-800)||(26815506-26815662)
chr6 (919-1025)||(26853993-26854104)
chr6 (890-944)||(27651844-27651898)
chr6 (385-435)||(27649473-27649523)
[»] chr4 (3 HSPs)
chr4 (889-954)||(18650303-18650368)
chr4 (889-954)||(18682721-18682786)
chr4 (889-954)||(18718522-18718587)


Alignment Details
Target: chr8 (Bit Score: 367; Significance: 0; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 521 - 1026
Target Start/End: Original strand, 29269272 - 29269782
Alignment:
Q  521 ttggaaggcaacatattaccataatacgttgtgacaacatgaacagcagtgattgacaatccaatccataaggaaatctcttttgcatgacataagagtt 620  Q
    |||||||  ||| ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29269272 ttggaagctaacgtattaccataatacgttgtgacaacatgaacaaaagtgattgacaatccaatccataaggaaatctcttttgcatgacataagagtt 29269371  T
Q  621 ttaactaacatgttcttactaacccttcacccataattataaaagtaaattt--ccctaaagaaactgtaaaaagttatattgcaacaaacatacatttg 718  Q
    || ||||||||||||||||||||||||||||||||||||||||||| | |||  ||||||| ||| ||||||  |||||  |||||||||||||||||||    
T  29269372 ttgactaacatgttcttactaacccttcacccataattataaaagtcattttttccctaaataaaatgtaaa--gttatggtgcaacaaacatacatttg 29269469  T
Q  719 gagtttttattttcttcttttgtttgatgtggaaattgccatttagaatttggctaaacttggtttcaaatgccatatacattgaaatacaaaatgtcat 818  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  29269470 gagttttgattttcttcttttgtttgatgtggaaattgccatttagaatttggctaaacttggtatcaaatgccatatacattgaaatacaaaatgtcat 29269569  T
Q  819 gttatcatagttaataatcaaacactaattaatttgagaaatggatcattggacagtgatttggttgaaacatctgtcggtatcacaatatgtacatact 918  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||| ||||||||||| |||||||||||||||| ||||||||    
T  29269570 gttatcatagttaataatcaaacactatttaatttgagaaatggatcattggacagaggtttcgttgaaacatcagtcggtatcacaatatctacatact 29269669  T
Q  919 cttgtattattaaaagcaaattaatcatacatacatatgacgttgctactacacaagttctgtctaagaaaagtgatttggc-----agtgtttttacac 1013  Q
    |||||||||||||||||||||||||||| ||||||||||  |||||| |||||||||||||||||  |||||||||||||||     |||||||||||||    
T  29269670 cttgtattattaaaagcaaattaatcatgcatacatatgttgttgctgctacacaagttctgtctctgaaaagtgatttggcagagaagtgtttttacac 29269769  T
Q  1014 aagaataacttaa 1026  Q
    |||||||||||||    
T  29269770 aagaataacttaa 29269782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 20 - 276
Target Start/End: Original strand, 29265299 - 29265555
Alignment:
Q  20 gatgtggcgttttcattttttccgtcaaatccatttttcttatgataccgatcacgcttccgcttcttccttctcttttcctttcaatctccatcagatt 119  Q
    |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  29265299 gatgtggcgttttcgttttttccgtaaaatccatttttcttatgataccgatcacgcttccgcttcttccttctcttttcctttcagtctcgatcagatt 29265398  T
Q  120 ccgaagaatatagaatcacgtatgaaggaggtaaggccttctccggaggtcggtttcgattgccattgtcattgtgtgatgaagattggacgatttcccg 219  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||    
T  29265399 ccgaagaatatagaatcacgtatgaaggaggtaaggacttctccggaggtcgattttgattgccattgtcattgtgtgatgaagattggatgatttcccg 29265498  T
Q  220 gttgagtagctatgaaatttcgtcgttgatgacagatatttcgatggggaggctgga 276  Q
    |||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||    
T  29265499 gttgagtagctatgaaatttcgacgttgatgaaagatatttcggtggggaggctgga 29265555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 277 - 388
Target Start/End: Original strand, 29266033 - 29266144
Alignment:
Q  277 tcgtttgttccactagattttggttcattttgaaaattagaagaaacccggttatgagggtaatgagcctaacagagccgggttcaacatgaccttctag 376  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29266033 tcgtttgttccactagattttggttcattttgaaaattagaagaaacccggttatgagggtaatgagcctaacagagccgggttcaacatgaccttctag 29266132  T
Q  377 tccatctactta 388  Q
    ||||||||||||    
T  29266133 tccatctactta 29266144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 92; E-Value: 4e-44
Query Start/End: Original strand, 432 - 523
Target Start/End: Original strand, 29268985 - 29269076
Alignment:
Q  432 ttacagtaagccaatgactaaaagtgcattcctttgagccattatttccacataaaaagaagtgtaaatgaacattatggatcaaaaatttg 523  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29268985 ttacagtaagccaatgactaaaagtgcattcctttgagccattatttccacataaaaagaagtgtaaatgaacattatggatcaaaaatttg 29269076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 389 - 435
Target Start/End: Original strand, 29268908 - 29268954
Alignment:
Q  389 ttccaatcgtgaataacaggaacagattgtgaataaattaaatttac 435  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||    
T  29268908 ttccaatcgtgaataacaggaacagattgtgaataaatcaaatttac 29268954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 284; Significance: 1e-158; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 284; E-Value: 1e-158
Query Start/End: Original strand, 704 - 1026
Target Start/End: Complemental strand, 18355 - 18028
Alignment:
Q  704 acaaacatacatttggagtttttattttcttcttttgtttgatgtggaaattgccatttagaatttggctaaacttggtttcaaatgccatatacattga 803  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  18355 acaaacatacatttggagtttttattttcttcttttgtttgatgtggaaattgccatttagaatttggctaaacttggtatcaaatgccatatacattga 18256  T
Q  804 aatacaaaatgtcatgttatcatagttaataatcaaacactaattaatttgagaaatggatcattggacagtgatttggttgaaacatctgtcggtatca 903  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18255 aatacaaaatgtcatgttatcatagttaataatcaaacactaattaatttgagaaatggatcattggacagtgatttggttgaaacatctgtcggtatca 18156  T
Q  904 caatatgtacatactcttgtattattaaaagcaaattaatcatacatacatatgacgttgctactacacaagttctgtctaagaaaagtgatttggc--- 1000  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||| |||||| |||||||||       
T  18155 caatatgtacatactcttgtattattaaaagcaaattaatcatacatacatatgttgttgctgctacacaagttctgtctcagaaaactgatttggcaga 18056  T
Q  1001 --agtgtttttacacaagaataacttaa 1026  Q
      ||||||||||||||||||||||||||    
T  18055 gaagtgtttttacacaagaataacttaa 18028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 284; Significance: 1e-158; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 284; E-Value: 1e-158
Query Start/End: Original strand, 704 - 1026
Target Start/End: Original strand, 27713589 - 27713916
Alignment:
Q  704 acaaacatacatttggagtttttattttcttcttttgtttgatgtggaaattgccatttagaatttggctaaacttggtttcaaatgccatatacattga 803  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  27713589 acaaacatacatttggagtttttattttcttcttttgtttgatgtggaaattgccatttagaatttggctaaacttggtatcaaatgccatatacattga 27713688  T
Q  804 aatacaaaatgtcatgttatcatagttaataatcaaacactaattaatttgagaaatggatcattggacagtgatttggttgaaacatctgtcggtatca 903  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27713689 aatacaaaatgtcatgttatcatagttaataatcaaacactaattaatttgagaaatggatcattggacagtgatttggttgaaacatctgtcggtatca 27713788  T
Q  904 caatatgtacatactcttgtattattaaaagcaaattaatcatacatacatatgacgttgctactacacaagttctgtctaagaaaagtgatttggc--- 1000  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||| |||||| |||||||||       
T  27713789 caatatgtacatactcttgtattattaaaagcaaattaatcatacatacatatgttgttgctgctacacaagttctgtctcagaaaactgatttggcaga 27713888  T
Q  1001 --agtgtttttacacaagaataacttaa 1026  Q
      ||||||||||||||||||||||||||    
T  27713889 gaagtgtttttacacaagaataacttaa 27713916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 884 - 1025
Target Start/End: Complemental strand, 26890927 - 26890781
Alignment:
Q  884 tgaaacatctgtcggtatcacaatatgtacatactcttgtattattaaaagcaaattaatcatacatacatatgacgttgctactacacaagttctgtct 983  Q
    |||| |||||||| ||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||| ||  | |||| ||||| |||||||||||    
T  26890927 tgaaccatctgtcagtatcacaatatgtacaaactcttgtactcttaaaagcaaattaatcatacatacatgtgttgctgctgctacataagttctgtct 26890828  T
Q  984 aagaaaagtgatttggc-----agtgtttttacacaagaataactta 1025  Q
     |||||| |||||||||     |||||||||||| ||||||||||||    
T  26890827 cagaaaactgatttggcagaaaagtgtttttacaaaagaataactta 26890781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 566 - 622
Target Start/End: Complemental strand, 26641672 - 26641616
Alignment:
Q  566 gcagtgattgacaatccaatccataaggaaatctcttttgcatgacataagagtttt 622  Q
    |||||||| |||||||| |||||||||||||| ||||||||| ||||||||||||||    
T  26641672 gcagtgatagacaatccgatccataaggaaatatcttttgcaagacataagagtttt 26641616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 566 - 622
Target Start/End: Complemental strand, 26747638 - 26747582
Alignment:
Q  566 gcagtgattgacaatccaatccataaggaaatctcttttgcatgacataagagtttt 622  Q
    |||||||| |||||||| |||||||||||||| ||||||||| ||||||||||||||    
T  26747638 gcagtgatagacaatccgatccataaggaaatatcttttgcaagacataagagtttt 26747582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 644 - 720
Target Start/End: Original strand, 27651710 - 27651784
Alignment:
Q  644 ccttcacccataattataaaagtaaatttccctaaagaaactgtaaaaagttatattgcaacaaacatacatttgga 720  Q
    ||||||||| | |||| |||||| || ||||| ||||||||||||||  |||| |||||||||||||||||||||||    
T  27651710 ccttcacccgttattaaaaaagtcaaattccccaaagaaactgtaaa--gttacattgcaacaaacatacatttgga 27651784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 641 - 800
Target Start/End: Complemental strand, 26815662 - 26815506
Alignment:
Q  641 aacccttcacccataattataaaagtaaatttccctaaagaaactgtaaaaagttatattgcaacaaacatacatttggagtttttattttcttcttttg 740  Q
    |||||||| |||| |||||||||||||| |||||| ||| ||||| |||   |||   ||||||||||||||||||| ||| | || ||||| |||||||    
T  26815662 aacccttctcccagaattataaaagtaagtttccccaaataaactataat--gttgctttgcaacaaacatacatttagagctgtttttttc-tcttttg 26815566  T
Q  741 tttgatgtggaaattgccatttagaatttggctaaacttggtttcaaatgccatatacat 800  Q
    || |||||||||| | || |||| | |  ||||||| ||||||| |||||| | ||||||    
T  26815565 ttcgatgtggaaaataccttttaaagtgaggctaaaattggtttgaaatgctacatacat 26815506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 919 - 1025
Target Start/End: Complemental strand, 26854104 - 26853993
Alignment:
Q  919 cttgtattattaaaagcaaattaatcatacatacatatgacgttgctactacacaagttctgtctaagaaaagtgatttggcag-----tgtttttacac 1013  Q
    ||||||||  |||||| |||||||||||||||| || ||    |||| |||| |||||||||||| |||||| ||| |||||||     |||||||||||    
T  26854104 cttgtatttctaaaaggaaattaatcatacatatatgtgtttctgctcctacgcaagttctgtctcagaaaactgacttggcagaaaattgtttttacac 26854005  T
Q  1014 aagaataactta 1025  Q
    ||||||||||||    
T  26854004 aagaataactta 26853993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 890 - 944
Target Start/End: Original strand, 27651844 - 27651898
Alignment:
Q  890 atctgtcggtatcacaatatgtacatactcttgtattattaaaagcaaattaatc 944  Q
    ||||||| ||||| ||||||||||| |||||||||||  ||||||||||||||||    
T  27651844 atctgtcagtatcgcaatatgtacaaactcttgtattcgtaaaagcaaattaatc 27651898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 385 - 435
Target Start/End: Original strand, 27649473 - 27649523
Alignment:
Q  385 cttattccaatcgtgaataacaggaacagattgtgaataaattaaatttac 435  Q
    ||||||| ||| |||||||||||||||||||| ||||||||  ||||||||    
T  27649473 cttattctaattgtgaataacaggaacagattatgaataaagcaaatttac 27649523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 1e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 889 - 954
Target Start/End: Original strand, 18650303 - 18650368
Alignment:
Q  889 catctgtcggtatcacaatatgtacatactcttgtattattaaaagcaaattaatcatacatacat 954  Q
    ||||||||| ||| | |||||||||||||||||||||| |||||||||| ||||||||||||||||    
T  18650303 catctgtcgatatgaaaatatgtacatactcttgtattcttaaaagcaatttaatcatacatacat 18650368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 889 - 954
Target Start/End: Original strand, 18682721 - 18682786
Alignment:
Q  889 catctgtcggtatcacaatatgtacatactcttgtattattaaaagcaaattaatcatacatacat 954  Q
    ||||| ||||||| | |||||||||||||||||||||| |||||||||| ||||||||||||||||    
T  18682721 catctatcggtatgaaaatatgtacatactcttgtattcttaaaagcaatttaatcatacatacat 18682786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 889 - 954
Target Start/End: Original strand, 18718522 - 18718587
Alignment:
Q  889 catctgtcggtatcacaatatgtacatactcttgtattattaaaagcaaattaatcatacatacat 954  Q
    ||||||||| ||| |  ||||||||||||||||||||| |||||||||| ||||||||||||||||    
T  18718522 catctgtcgatatgaatatatgtacatactcttgtattcttaaaagcaatttaatcatacatacat 18718587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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