View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9081_low_10 (Length: 544)
Name: NF9081_low_10
Description: NF9081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9081_low_10 |
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| [»] scaffold0667 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 380; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 18 - 466
Target Start/End: Original strand, 45242830 - 45243287
Alignment:
| Q |
18 |
aggaatttcactatacacaaatttctaaacaacatttttcttatacacggataccacagcagggtggaatagtctcaactcagagataagctcgtcaaaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
45242830 |
aggaatttcactatacacaaatttctaaacaacatttttcttatacacggataccacagcagggtggaatagtctcaactcagaaataagctcgtcaaaa |
45242929 |
T |
|
| Q |
118 |
tgatgatttaggagtgaggatatataaaataacgaagaggnnnnnnn-tcaattcatatcgagattctttctttaactaaatttatatgaaaatgaattg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
45242930 |
tgatgatttaggagtgaggatatataaaataacgaagaggaaaaaaaatcaattcatatcgaggttctttctttaactaaatttatatgaaaatgaattg |
45243029 |
T |
|
| Q |
217 |
ttgtctagcttaatgcttttcttcgtcacacacaaaacatacactctttattgtttctttcgaaattcaacatgcagtcattttcaaaatcatgtaaaaa |
316 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45243030 |
ttgtctagcttaatgcttttcttcgtcacacacacaacatacactctttattgtttctttcgaaattcaacatgcagtcattttcaaaatcatgtaaaaa |
45243129 |
T |
|
| Q |
317 |
tatgtacataaacaaacgatacaaaaagttgattcgatttgacctctaataaaatgcagttatgttatttcgacatcaaaatacatacaccataatatat |
416 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
45243130 |
tatgtacataaacaaacgacacaaaaagttgattcgatttgacctctaataaaatgcagttatgttatttcgacatcaaaatacatacaccataaaatat |
45243229 |
T |
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| Q |
417 |
ga--------tgtttatccctatctctcttattctttatcttctagaacttacagata |
466 |
Q |
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| T |
45243230 |
gatacagatgtgtttatccctatctctcttattctttatcttctagaacttacagata |
45243287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 485 - 534
Target Start/End: Original strand, 45243309 - 45243356
Alignment:
| Q |
485 |
catgcaaaaaccaatggatactgtacctgatatcaaaattttgatgtcca |
534 |
Q |
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| T |
45243309 |
catgcaaaaaccaatggataca--acctgatatcaaaattttgatgtcca |
45243356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 9e-22; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 322 - 410
Target Start/End: Complemental strand, 8576934 - 8576845
Alignment:
| Q |
322 |
acataaacaaacgatacaa-aaagttgattcgatttgacctctaataaaatgcagttatgttatttcgacatcaaaatacatacaccata |
410 |
Q |
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| T |
8576934 |
acataaacaaactacacaagaaaggtgattcaatttgacctctaacaaaatgcagttgtgttatttcaacatcaaaatacatacaccata |
8576845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 230
Target Start/End: Complemental strand, 8580242 - 8580177
Alignment:
| Q |
165 |
tcaattcatatcgagattctttctttaactaaatttatatgaaaatgaattgttgtctagcttaat |
230 |
Q |
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| T |
8580242 |
tcaattcatattgatattctttctttaacctaatttataagaaaatggatcattgtctaacttaat |
8580177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 134
Target Start/End: Complemental strand, 9061925 - 9061857
Alignment:
| Q |
68 |
ataccacagcagggtggaatagtctcaac--tcagagataagctcgtcaaaatgatgatttaggagtga |
134 |
Q |
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| T |
9061925 |
ataccacagcagggtggaatagtctccacattcagaaataagttggccaaaataattatttaggagtga |
9061857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 68 - 96
Target Start/End: Original strand, 9315508 - 9315536
Alignment:
| Q |
68 |
ataccacagcagggtggaatagtctcaac |
96 |
Q |
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| T |
9315508 |
ataccacagcagggtggaatagtctcaac |
9315536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 60 - 96
Target Start/End: Complemental strand, 12019637 - 12019601
Alignment:
| Q |
60 |
atacacggataccacagcagggtggaatagtctcaac |
96 |
Q |
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|||||| ||||||||| |||||||||||||||||||| |
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| T |
12019637 |
atacacagataccacaacagggtggaatagtctcaac |
12019601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0667 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0667
Description:
Target: scaffold0667; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 76 - 132
Target Start/End: Original strand, 2000 - 2058
Alignment:
| Q |
76 |
gcagggtggaatagtctcaac--tcagagataagctcgtcaaaatgatgatttaggagt |
132 |
Q |
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| T |
2000 |
gcagggtggaatagtctcaacattcagaaataagctggtcaaaataattatttaggagt |
2058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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